Wall clock time and date at job start Sun Mar 29 2020 21:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 C 1.50704 * 109.46928 * 119.99651 * 2 1 3 5 5 C 1.34332 * 126.44137 * 120.00109 * 4 2 1 6 6 N 1.34472 * 107.66951 * 179.97438 * 5 4 2 7 7 C 1.30261 * 108.70194 * 0.02562 * 6 5 4 8 8 C 1.50694 * 125.62250 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.46955 * 89.95888 * 8 7 6 10 10 C 1.46509 * 120.00241 * 270.00253 * 9 8 7 11 11 C 1.36938 * 120.00350 * 90.00032 * 9 8 7 12 12 H 1.08007 * 119.99594 * 22.35104 * 11 9 8 13 13 C 1.38803 * 120.00562 * 202.34997 * 11 9 8 14 14 N 1.31623 * 119.99739 * 11.33709 * 13 11 9 15 15 Si 1.86799 * 120.00194 * 191.33649 * 13 11 9 16 16 H 1.48493 * 109.47513 * 90.00126 * 15 13 11 17 17 H 1.48507 * 109.47156 * 210.00197 * 15 13 11 18 18 H 1.48497 * 109.47289 * 329.99634 * 15 13 11 19 19 O 1.33965 * 108.75788 * 359.97438 * 7 6 5 20 20 H 1.08998 * 109.47070 * 300.00028 * 1 2 3 21 21 H 1.08997 * 109.47107 * 60.00446 * 1 2 3 22 22 H 1.09000 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47070 * 239.99972 * 2 1 3 24 24 H 1.08996 * 109.46738 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46806 * 299.99738 * 3 2 1 26 26 H 1.08998 * 109.47212 * 60.00058 * 3 2 1 27 27 H 1.08005 * 126.16556 * 359.71634 * 5 4 2 28 28 H 1.08995 * 109.47834 * 209.95687 * 8 7 6 29 29 H 1.09004 * 109.47148 * 329.96261 * 8 7 6 30 30 H 1.08995 * 109.46761 * 94.21483 * 10 9 8 31 31 H 1.08999 * 109.47149 * 214.21715 * 10 9 8 32 32 H 1.09005 * 109.46614 * 334.21580 * 10 9 8 33 33 H 0.97005 * 119.99929 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8077 -1.8069 1.2582 6 7 3.0285 -2.1182 2.5476 7 6 2.4137 -1.2492 3.2983 8 6 2.4080 -1.2393 4.8052 9 7 3.5340 -0.4387 5.2926 10 6 4.8295 -1.0743 5.5458 11 6 3.3756 0.9038 5.5114 12 1 2.3896 1.3107 5.6807 13 6 4.4822 1.7416 5.5158 14 7 5.6465 1.2962 5.0933 15 14 4.3192 3.5012 6.1212 16 1 4.5875 3.5494 7.5809 17 1 5.2976 4.3623 5.4094 18 1 2.9429 3.9910 5.8544 19 8 1.7883 -0.3649 2.5099 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9564 0.8900 27 1 3.1824 -2.3444 0.3996 28 1 1.4734 -0.8069 5.1623 29 1 2.5009 -2.2603 5.1756 30 1 5.4617 -0.9744 4.6636 31 1 5.3117 -0.5904 6.3952 32 1 4.6787 -2.1309 5.7670 33 1 6.4200 1.8816 5.0967 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685972551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:47 Heat of formation + Delta-G solvation = 32.950032 kcal Electronic energy + Delta-G solvation = -15674.798537 eV Core-core repulsion = 13123.855197 eV Total energy + Delta-G solvation = -2550.943340 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.45361 -35.89180 -35.21954 -33.81415 -31.62174 -29.10849 -27.07403 -26.35714 -25.76952 -22.42061 -21.81335 -20.75265 -19.63567 -16.84137 -16.24889 -15.80626 -15.00482 -14.81764 -14.26539 -13.63209 -13.52635 -13.04711 -12.92657 -12.77860 -12.10200 -11.83675 -11.40134 -11.21025 -11.13674 -10.95135 -10.89063 -10.74058 -10.50223 -10.38814 -10.08294 -9.98733 -9.67410 -8.65961 -7.96106 -6.97768 -5.83572 -3.32144 2.23666 3.31681 3.39078 3.41224 3.47483 3.51614 4.42863 4.82886 4.94294 5.11543 5.20035 5.38946 5.52864 5.56326 5.67991 5.71577 5.86908 5.93878 5.98086 6.18299 6.29870 6.36396 6.39680 6.58445 6.77298 6.80440 7.12819 7.34349 7.70010 7.76829 8.25760 8.62403 9.10225 9.69594 10.17838 11.19981 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026412 B = 0.009155 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.863494 B = 3057.772915 C = 3661.914842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.002 4.002 3 C -0.148 4.148 4 C -0.070 4.070 5 C -0.046 4.046 6 N -0.506 5.506 7 C 0.202 3.798 8 C 0.228 3.772 9 N -0.576 5.576 10 C 0.161 3.839 11 C -0.267 4.267 12 H 0.075 0.925 13 C 0.008 3.992 14 N -0.899 5.899 15 Si 0.910 3.090 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.277 1.277 19 O -0.194 6.194 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.168 0.832 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.005 0.995 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.902 -2.710 -7.619 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 C -0.206 4.206 4 C -0.125 4.125 5 C -0.184 4.184 6 N -0.235 5.235 7 C -0.009 4.009 8 C 0.097 3.903 9 N -0.296 5.296 10 C 0.017 3.983 11 C -0.396 4.396 12 H 0.093 0.907 13 C -0.192 4.192 14 N -0.542 5.542 15 Si 0.740 3.260 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.202 1.202 19 O -0.080 6.080 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.185 0.815 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.362 -3.072 -7.318 10.825 hybrid contribution -0.061 1.554 -0.377 1.601 sum -7.423 -1.518 -7.695 10.799 Atomic orbital electron populations 1.21852 0.94154 1.02063 1.02249 1.19562 0.95927 0.95824 0.90777 1.21857 1.01753 0.94746 1.02205 1.23146 1.05311 0.99316 0.84692 1.22869 1.02278 0.97890 0.95384 1.70394 1.23309 1.28262 1.01533 1.29261 0.90293 0.83167 0.98134 1.19855 0.94025 0.97338 0.79089 1.44335 1.08402 1.06112 1.70788 1.20908 0.85884 0.91167 1.00324 1.19333 0.94128 0.82939 1.43235 0.90683 1.25157 0.96280 0.98319 0.99401 1.70108 1.00193 1.35642 1.48237 0.86166 0.77502 0.83916 0.78441 1.21109 1.21608 1.20232 1.84434 1.58834 1.49195 1.15562 0.92077 0.92096 0.92498 0.88884 0.92199 0.92179 0.91870 0.81503 0.90819 0.89658 0.95008 0.93063 0.97622 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.18 37.16 0.34 -1.40 16 2 C 0.00 -0.03 3.33 -91.77 -0.31 -0.33 16 3 C -0.15 -2.08 9.18 37.16 0.34 -1.74 16 4 C -0.07 -1.31 5.89 -35.68 -0.21 -1.52 16 5 C -0.05 -0.88 11.79 -17.77 -0.21 -1.09 16 6 N -0.51 -11.31 11.29 -11.10 -0.13 -11.43 16 7 C 0.20 4.55 7.93 -12.95 -0.10 4.45 16 8 C 0.23 4.91 6.33 -5.20 -0.03 4.88 16 9 N -0.58 -14.79 2.91 -182.50 -0.53 -15.32 16 10 C 0.16 4.10 9.01 59.85 0.54 4.64 16 11 C -0.27 -7.35 9.67 -15.06 -0.15 -7.50 16 12 H 0.08 2.00 7.84 -52.48 -0.41 1.59 16 13 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 14 N -0.90 -26.45 10.58 55.49 0.59 -25.86 16 15 Si 0.91 21.81 29.57 -169.99 -5.03 16.79 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 O -0.19 -4.26 10.77 5.38 0.06 -4.20 16 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 29 H 0.09 1.63 7.86 -51.93 -0.41 1.22 16 30 H 0.03 0.89 7.42 -51.93 -0.39 0.51 16 31 H 0.05 1.36 7.19 -51.93 -0.37 0.98 16 32 H 0.01 0.12 7.84 -51.93 -0.41 -0.29 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 283.40 15.07 4.27 4.27 Total: -1.00 -31.83 283.40 -5.56 -37.39 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.92 Total: -2.16 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 0.12 Total: 0.52 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.07 Total: -52.61 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.06 Total: -4.20 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.83 -5.56 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685972551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.339 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds