Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00327 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99743 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46725 * 60.00093 * 11 9 7 13 13 H 1.48505 * 109.46988 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47116 * 300.00069 * 11 9 7 15 15 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 16 16 C 1.35351 * 126.75011 * 274.71474 * 15 2 1 17 17 N 1.35313 * 106.17420 * 179.84721 * 16 15 2 18 18 C 1.46499 * 125.86584 * 180.11158 * 17 16 15 19 19 N 1.28710 * 108.26528 * 0.41858 * 17 16 15 20 20 N 1.28636 * 110.17603 * 359.73157 * 19 17 16 21 21 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 22 22 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 23 23 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 25 25 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 26 26 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 27 27 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 29 29 H 0.97000 * 120.00354 * 180.02562 * 10 9 7 30 30 H 1.07999 * 126.91184 * 359.97438 * 16 15 2 31 31 H 1.08997 * 109.47546 * 270.33085 * 18 17 16 32 32 H 1.09000 * 109.47304 * 30.33357 * 18 17 16 33 33 H 1.09000 * 109.46727 * 150.32804 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5949 -0.5333 -3.5745 7 6 2.6599 0.4057 -4.7515 8 1 2.3648 1.4381 -4.6356 9 6 3.0962 -0.0533 -5.9762 10 7 3.4561 -1.3103 -6.1172 11 14 3.1761 1.1104 -7.4353 12 1 4.0977 2.2324 -7.1236 13 1 3.6749 0.3771 -8.6265 14 1 1.8201 1.6467 -7.7155 15 6 2.0324 -0.7104 1.2304 16 6 2.2183 -0.1710 2.4578 17 7 2.6743 -1.1730 3.2447 18 6 3.0151 -1.0615 4.6651 19 7 2.7632 -2.2392 2.5293 20 7 2.3876 -1.9967 1.3231 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.4495 -1.4980 -1.4100 25 1 2.7588 1.0462 -2.1183 26 1 1.0870 0.6163 -2.5525 27 1 3.5902 -0.9273 -3.3692 28 1 1.9182 -1.3566 -3.8030 29 1 3.7634 -1.6332 -6.9788 30 1 2.0371 0.8526 2.7507 31 1 4.0646 -0.7854 4.7664 32 1 2.3919 -0.2972 5.1294 33 1 2.8422 -2.0190 5.1564 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720602795.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = 91.429453 kcal Electronic energy + Delta-G solvation = -14813.079426 eV Core-core repulsion = 12296.964695 eV Total energy + Delta-G solvation = -2516.114731 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.10912 -36.92619 -34.49226 -33.25053 -31.62818 -29.74756 -27.95489 -27.69553 -24.38402 -23.15519 -21.94929 -20.45476 -20.29390 -17.20884 -16.54611 -16.22579 -15.17524 -14.80700 -14.35867 -14.29158 -13.84474 -13.54782 -13.32898 -12.56360 -12.44677 -12.19413 -11.85071 -11.64244 -11.09033 -10.94541 -10.85785 -10.65202 -10.47742 -9.97728 -9.92299 -9.33989 -9.10608 -8.99254 -8.28134 -7.67347 -5.92254 -3.95053 1.65300 2.36954 2.75402 3.37767 3.42086 3.44199 4.25882 4.47491 4.55764 4.70979 4.75877 4.94275 4.98298 5.29754 5.38499 5.43202 5.45688 5.71538 5.83379 6.04127 6.17775 6.34456 6.42855 6.52225 6.60524 7.06498 7.59052 7.82646 7.92541 8.07195 8.19518 8.51199 8.69631 9.12470 9.68116 11.19117 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.058814 B = 0.004582 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.959367 B = 6110.000019 C = 6286.855579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.166 3.834 3 H 0.090 0.910 4 N -0.677 5.677 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.008 3.992 16 C -0.061 4.061 17 N -0.301 5.301 18 C 0.084 3.916 19 N -0.097 5.097 20 N -0.240 5.240 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.344 0.656 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.015 0.985 29 H 0.261 0.739 30 H 0.186 0.814 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 4.289 20.990 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.052 3.948 3 H 0.108 0.892 4 N -0.307 5.307 5 C -0.061 4.061 6 C -0.013 4.013 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.131 4.131 16 C -0.212 4.212 17 N -0.095 5.095 18 C -0.057 4.057 19 N -0.077 5.077 20 N -0.106 5.106 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.163 0.837 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.204 0.796 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.176 2.731 21.035 21.448 hybrid contribution -1.046 1.903 -0.781 2.308 sum -4.221 4.635 20.254 21.202 Atomic orbital electron populations 1.22484 0.96402 1.02482 1.02127 1.19731 0.92018 0.96141 0.86868 0.89182 1.60459 1.56817 1.09971 1.03492 1.22201 0.98128 0.95211 0.90570 1.19060 0.97166 0.95287 0.89744 1.21146 1.44032 0.96312 0.94576 0.92837 1.25004 0.95467 0.95065 0.98824 1.69969 1.44333 1.14358 1.24492 0.86662 0.78317 0.80942 0.82064 1.20281 1.21312 1.20322 1.22084 1.03965 0.91760 0.95297 1.23241 1.09165 0.96714 0.92093 1.47201 1.43298 1.07653 1.11352 1.22171 1.02956 1.05343 0.75254 1.78348 1.20402 1.10178 0.98736 1.75129 1.12545 1.14936 1.08002 0.92589 0.91566 0.92240 0.83707 0.92450 0.96525 0.95604 0.96703 0.92964 0.79647 0.89366 0.88648 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.14 37.16 0.34 -1.92 16 2 C 0.17 2.50 3.07 -68.86 -0.21 2.29 16 3 H 0.09 1.26 7.80 -51.93 -0.40 0.86 16 4 N -0.68 -13.01 6.11 -107.95 -0.66 -13.67 16 5 C 0.07 1.44 5.42 -3.82 -0.02 1.41 16 6 C 0.02 0.67 5.23 -27.88 -0.15 0.53 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 C 0.01 0.12 6.18 -82.78 -0.51 -0.39 16 16 C -0.06 -0.70 11.55 -17.05 -0.20 -0.90 16 17 N -0.30 -3.45 3.74 -68.06 -0.25 -3.71 16 18 C 0.08 0.45 11.39 59.85 0.68 1.14 16 19 N -0.10 -1.54 13.16 60.35 0.79 -0.75 16 20 N -0.24 -4.32 12.24 33.29 0.41 -3.92 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 23 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 24 H 0.34 6.69 8.47 -39.29 -0.33 6.36 16 25 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 26 H 0.02 0.34 7.44 -51.93 -0.39 -0.05 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 286.26 15.07 4.31 4.31 Total: -1.00 -35.10 286.26 -5.01 -40.11 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -4.85 Total: -0.85 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.48 Total: -11.66 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 1.02 Total: -48.91 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.10 -5.01 -40.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720602795.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.542 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds