Wall clock time and date at job start Sun Mar 29 2020 21:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36927 * 120.00257 * 2 1 4 4 H 1.08001 * 120.00362 * 201.74597 * 3 2 1 5 5 C 1.38814 * 119.99962 * 21.74700 * 3 2 1 6 6 N 1.31625 * 119.99782 * 11.45475 * 5 3 2 7 7 Si 1.86806 * 120.00216 * 191.44953 * 5 3 2 8 8 H 1.48503 * 109.46703 * 90.00147 * 7 5 3 9 9 H 1.48496 * 109.47101 * 210.00296 * 7 5 3 10 10 H 1.48496 * 109.47006 * 330.00409 * 7 5 3 11 11 C 1.46504 * 120.00014 * 179.97438 * 2 1 3 12 12 N 1.46502 * 109.47080 * 270.00384 * 11 2 1 13 13 C 1.36102 * 132.64114 * 269.94954 * 12 11 2 14 14 O 1.21283 * 134.13499 * 0.06683 * 13 12 11 15 15 C 1.51720 * 91.73094 * 180.02562 * 13 12 11 16 16 C 1.46410 * 132.64841 * 90.00257 * 12 11 2 17 17 C 1.52864 * 121.31026 * 305.49411 * 16 12 11 18 18 C 1.53963 * 86.76694 * 101.17814 * 17 16 12 19 19 C 1.52856 * 121.31633 * 54.42664 * 16 12 11 20 20 H 1.08995 * 109.46928 * 275.25018 * 1 2 3 21 21 H 1.08999 * 109.47025 * 35.25058 * 1 2 3 22 22 H 1.09004 * 109.47097 * 155.24886 * 1 2 3 23 23 H 0.96996 * 119.99627 * 179.97438 * 6 5 3 24 24 H 1.08993 * 109.47253 * 149.99935 * 11 2 1 25 25 H 1.09010 * 109.47041 * 29.99979 * 11 2 1 26 26 H 1.08993 * 113.76781 * 245.70269 * 15 13 12 27 27 H 1.08996 * 113.76704 * 114.30109 * 15 13 12 28 28 H 1.09004 * 113.65846 * 215.64409 * 17 16 12 29 29 H 1.08992 * 113.66848 * 346.70449 * 17 16 12 30 30 H 1.08997 * 113.57309 * 270.08366 * 18 17 16 31 31 H 1.08999 * 113.64725 * 139.31492 * 18 17 16 32 32 H 1.08999 * 113.66954 * 13.29618 * 19 16 12 33 33 H 1.09006 * 113.66720 * 144.35945 * 19 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1720 1.2191 -0.3465 5 6 1.5297 2.3452 0.4454 6 7 0.3753 2.2745 1.0738 7 14 2.3338 4.0058 0.1531 8 1 1.8744 4.5561 -1.1474 9 1 1.9566 4.9377 1.2460 10 1 3.8097 3.8436 0.1283 11 6 2.1975 -1.2688 0.0006 12 7 2.4416 -1.6911 1.3820 13 6 3.4626 -1.4570 2.2509 14 8 4.5000 -0.8319 2.1864 15 6 2.7931 -2.2842 3.3323 16 6 1.6743 -2.5155 2.3175 17 6 0.2188 -2.1906 2.6532 18 6 -0.1668 -3.3146 1.6743 19 6 1.2198 -3.9266 1.9446 20 1 -0.3633 0.0940 1.0233 21 1 -0.3633 0.8392 -0.5931 22 1 -0.3633 -0.9333 -0.4303 23 1 -0.0576 3.0846 1.3854 24 1 3.1498 -1.1387 -0.5133 25 1 1.6084 -2.0287 -0.5130 26 1 2.4847 -1.7037 4.2017 27 1 3.3410 -3.1889 3.5958 28 1 -0.0488 -2.4014 3.6887 29 1 -0.0948 -1.1992 2.3266 30 1 -0.2997 -2.9723 0.6480 31 1 -0.9926 -3.9344 2.0235 32 1 1.7054 -4.3212 1.0521 33 1 1.2339 -4.6260 2.7806 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743359261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:31 Heat of formation + Delta-G solvation = 44.091366 kcal Electronic energy + Delta-G solvation = -16253.547025 eV Core-core repulsion = 13703.086810 eV Total energy + Delta-G solvation = -2550.460216 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54728 -37.12580 -35.51696 -34.02072 -31.39955 -28.77607 -26.08070 -25.38289 -24.64434 -23.32387 -21.25391 -19.60886 -17.56610 -16.72914 -16.11363 -15.79621 -15.32342 -14.60029 -14.37088 -13.69808 -13.54089 -13.30899 -12.47129 -12.28751 -12.18634 -11.84561 -11.41138 -11.35117 -10.92139 -10.74418 -10.52767 -10.42662 -10.13473 -10.05446 -10.01171 -9.87737 -9.16877 -8.59383 -8.03101 -6.95443 -5.78090 -3.25175 3.23697 3.39013 3.45308 3.49527 3.71777 4.49768 4.62168 4.81441 4.87259 4.97048 5.12620 5.45284 5.52315 5.58388 5.82464 5.86190 5.89815 5.93432 6.04930 6.13172 6.32329 6.38749 6.50916 6.59804 6.66671 7.27367 7.49144 7.53936 7.70905 7.81342 8.32565 9.06100 9.17532 9.76745 10.23263 11.26120 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.010350 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.469536 B = 2704.756937 C = 3141.084941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.584 5.584 3 C -0.258 4.258 4 H 0.072 0.928 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.356 3.644 12 N -0.606 5.606 13 C 0.527 3.473 14 O -0.518 6.518 15 C -0.170 4.170 16 C 0.135 3.865 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.135 4.135 20 H 0.036 0.964 21 H 0.046 0.954 22 H -0.003 1.003 23 H 0.253 0.747 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.951 -12.136 2.376 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.203 1.203 11 C 0.149 3.851 12 N -0.347 5.347 13 C 0.313 3.687 14 O -0.392 6.392 15 C -0.211 4.211 16 C 0.047 3.953 17 C -0.181 4.181 18 C -0.173 4.173 19 C -0.174 4.174 20 H 0.054 0.946 21 H 0.065 0.935 22 H 0.016 0.984 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.542 -11.536 2.102 11.827 hybrid contribution 0.196 1.038 0.014 1.056 sum -1.346 -10.498 2.117 10.794 Atomic orbital electron populations 1.20928 0.82318 0.95453 0.99746 1.44777 1.02473 1.01387 1.81963 1.19286 0.97833 0.84930 1.36696 0.91003 1.25051 0.97480 0.98752 0.97848 1.70059 1.17445 1.27168 1.40382 0.86196 0.79179 0.83629 0.77274 1.21379 1.21651 1.20258 1.21205 0.95933 0.86902 0.81015 1.52773 1.19306 1.48431 1.14205 1.22013 0.82669 0.79057 0.84999 1.90661 1.24169 1.43473 1.80935 1.23756 0.96861 1.01302 0.99200 1.21862 0.92717 0.92355 0.88354 1.23149 0.94421 1.01196 0.99318 1.22804 0.96352 0.97845 1.00296 1.23060 0.96921 0.95618 1.01780 0.94581 0.93494 0.98427 0.93678 0.91325 0.92167 0.87840 0.88121 0.89659 0.88891 0.90236 0.91666 0.91247 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 8.65 59.85 0.52 4.31 16 2 N -0.58 -14.60 3.17 -184.86 -0.59 -15.19 16 3 C -0.26 -7.30 9.68 -15.06 -0.15 -7.44 16 4 H 0.07 2.08 7.84 -52.49 -0.41 1.67 16 5 C 0.01 0.21 5.14 -17.43 -0.09 0.12 16 6 N -0.91 -26.37 10.55 55.49 0.59 -25.78 16 7 Si 0.91 22.74 29.57 -169.99 -5.03 17.72 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.36 7.50 7.33 -63.74 -0.47 7.03 16 12 N -0.61 -12.05 3.57 -168.35 -0.60 -12.65 16 13 C 0.53 11.21 9.67 -10.63 -0.10 11.10 16 14 O -0.52 -13.12 18.03 5.56 0.10 -13.02 16 15 C -0.17 -2.64 8.05 -27.50 -0.22 -2.86 16 16 C 0.13 2.11 1.91 -132.87 -0.25 1.86 16 17 C -0.14 -2.16 7.98 -26.30 -0.21 -2.37 16 18 C -0.14 -1.74 8.08 -25.74 -0.21 -1.95 16 19 C -0.14 -1.64 7.98 -26.31 -0.21 -1.85 16 20 H 0.04 0.92 5.53 -51.93 -0.29 0.63 16 21 H 0.05 1.21 7.22 -51.93 -0.37 0.84 16 22 H 0.00 -0.06 7.49 -51.93 -0.39 -0.45 16 23 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.07 1.48 8.03 -51.93 -0.42 1.07 16 25 H 0.06 1.10 7.86 -51.92 -0.41 0.69 16 26 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.09 1.79 5.85 -51.93 -0.30 1.49 16 30 H 0.08 1.13 7.79 -51.93 -0.40 0.72 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 275.43 15.07 4.15 4.15 Total: -1.00 -32.28 275.43 -7.43 -39.72 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -4.67 Total: -2.88 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.39 Total: 7.95 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.60 Total: -53.63 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.10 Total: -13.02 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.28 -7.43 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.807 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds