Wall clock time and date at job start Sun Mar 29 2020 21:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36927 * 120.00257 * 2 1 4 4 H 1.08001 * 120.00362 * 201.74597 * 3 2 1 5 5 C 1.38814 * 119.99962 * 21.74700 * 3 2 1 6 6 N 1.31625 * 119.99782 * 11.45475 * 5 3 2 7 7 Si 1.86806 * 120.00216 * 191.44953 * 5 3 2 8 8 H 1.48503 * 109.46703 * 90.00147 * 7 5 3 9 9 H 1.48496 * 109.47101 * 210.00296 * 7 5 3 10 10 H 1.48496 * 109.47006 * 330.00409 * 7 5 3 11 11 C 1.46504 * 120.00014 * 179.97438 * 2 1 3 12 12 N 1.46502 * 109.47080 * 270.00384 * 11 2 1 13 13 C 1.36102 * 132.64114 * 269.94954 * 12 11 2 14 14 O 1.21283 * 134.13499 * 0.06683 * 13 12 11 15 15 C 1.51720 * 91.73094 * 180.02562 * 13 12 11 16 16 C 1.46410 * 132.64841 * 90.00257 * 12 11 2 17 17 C 1.52864 * 121.31026 * 305.49411 * 16 12 11 18 18 C 1.53963 * 86.76694 * 101.17814 * 17 16 12 19 19 C 1.52856 * 121.31633 * 54.42664 * 16 12 11 20 20 H 1.08995 * 109.46928 * 275.25018 * 1 2 3 21 21 H 1.08999 * 109.47025 * 35.25058 * 1 2 3 22 22 H 1.09004 * 109.47097 * 155.24886 * 1 2 3 23 23 H 0.96996 * 119.99627 * 179.97438 * 6 5 3 24 24 H 1.08993 * 109.47253 * 149.99935 * 11 2 1 25 25 H 1.09010 * 109.47041 * 29.99979 * 11 2 1 26 26 H 1.08993 * 113.76781 * 245.70269 * 15 13 12 27 27 H 1.08996 * 113.76704 * 114.30109 * 15 13 12 28 28 H 1.09004 * 113.65846 * 215.64409 * 17 16 12 29 29 H 1.08992 * 113.66848 * 346.70449 * 17 16 12 30 30 H 1.08997 * 113.57309 * 270.08366 * 18 17 16 31 31 H 1.08999 * 113.64725 * 139.31492 * 18 17 16 32 32 H 1.08999 * 113.66954 * 13.29618 * 19 16 12 33 33 H 1.09006 * 113.66720 * 144.35945 * 19 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1720 1.2191 -0.3465 5 6 1.5297 2.3452 0.4454 6 7 0.3753 2.2745 1.0738 7 14 2.3338 4.0058 0.1531 8 1 1.8744 4.5561 -1.1474 9 1 1.9566 4.9377 1.2460 10 1 3.8097 3.8436 0.1283 11 6 2.1975 -1.2688 0.0006 12 7 2.4416 -1.6911 1.3820 13 6 3.4626 -1.4570 2.2509 14 8 4.5000 -0.8319 2.1864 15 6 2.7931 -2.2842 3.3323 16 6 1.6743 -2.5155 2.3175 17 6 0.2188 -2.1906 2.6532 18 6 -0.1668 -3.3146 1.6743 19 6 1.2198 -3.9266 1.9446 20 1 -0.3633 0.0940 1.0233 21 1 -0.3633 0.8392 -0.5931 22 1 -0.3633 -0.9333 -0.4303 23 1 -0.0576 3.0846 1.3854 24 1 3.1498 -1.1387 -0.5133 25 1 1.6084 -2.0287 -0.5130 26 1 2.4847 -1.7037 4.2017 27 1 3.3410 -3.1889 3.5958 28 1 -0.0488 -2.4014 3.6887 29 1 -0.0948 -1.1992 2.3266 30 1 -0.2997 -2.9723 0.6480 31 1 -0.9926 -3.9344 2.0235 32 1 1.7054 -4.3212 1.0521 33 1 1.2339 -4.6260 2.7806 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743359261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:31 Heat of formation + Delta-G solvation = 22.903081 kcal Electronic energy + Delta-G solvation = -16254.465818 eV Core-core repulsion = 13703.086810 eV Total energy + Delta-G solvation = -2551.379008 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93839 -38.66684 -37.42648 -35.52185 -33.41563 -30.43151 -28.05776 -26.55706 -26.31391 -24.55190 -23.16002 -20.95368 -19.20073 -18.64789 -17.70405 -17.22497 -16.94946 -16.42821 -15.65194 -15.50052 -15.19491 -14.96682 -14.29363 -13.78608 -13.59740 -13.25251 -13.05730 -12.94543 -12.67183 -12.54267 -12.30800 -12.13985 -12.00781 -11.55984 -11.30774 -11.20667 -10.86528 -10.65905 -9.62309 -8.99798 -7.93245 -5.42698 1.36700 1.38810 1.47822 1.60956 2.26700 2.43412 3.19962 3.24315 3.61324 3.72801 3.75495 3.81879 4.05373 4.24937 4.44993 4.59500 4.75334 4.76940 4.88022 4.94244 4.96675 5.16243 5.18297 5.27273 5.30968 5.52097 5.55137 5.77045 5.95423 6.03027 6.24170 7.06345 7.43433 7.73251 8.13809 9.07946 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.010350 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.469536 B = 2704.756937 C = 3141.084941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.268 4.268 4 H 0.055 0.945 5 C -0.042 4.042 6 N -0.927 5.927 7 Si 0.963 3.037 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.358 3.642 12 N -0.615 5.615 13 C 0.498 3.502 14 O -0.575 6.575 15 C -0.144 4.144 16 C 0.124 3.876 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.112 4.112 20 H 0.016 0.984 21 H 0.016 0.984 22 H 0.033 0.967 23 H 0.250 0.750 24 H 0.052 0.948 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.633 -14.620 3.228 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.326 5.326 3 C -0.398 4.398 4 H 0.073 0.927 5 C -0.238 4.238 6 N -0.573 5.573 7 Si 0.791 3.209 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.151 3.849 12 N -0.355 5.355 13 C 0.286 3.714 14 O -0.454 6.454 15 C -0.184 4.184 16 C 0.038 3.962 17 C -0.185 4.185 18 C -0.166 4.166 19 C -0.150 4.150 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.161 0.839 28 H 0.131 0.869 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.250 -14.080 2.961 14.563 hybrid contribution 0.415 1.722 -0.252 1.789 sum -1.836 -12.358 2.708 12.784 Atomic orbital electron populations 1.20638 0.81739 0.95876 0.98192 1.44854 1.02925 1.01709 1.83072 1.19358 0.97338 0.86799 1.36319 0.92715 1.25694 0.98281 1.01518 0.98280 1.70193 1.18318 1.27435 1.41344 0.85341 0.77919 0.80199 0.77427 1.20261 1.21601 1.20757 1.21129 0.95460 0.86421 0.81905 1.52562 1.20063 1.48770 1.14057 1.23197 0.82152 0.79030 0.87002 1.90608 1.26553 1.45952 1.82284 1.23729 0.95544 1.01538 0.97590 1.22325 0.92720 0.94381 0.86767 1.23221 0.94028 0.99651 1.01569 1.22761 0.98114 0.97051 0.98707 1.23057 0.95186 0.93465 1.03330 0.96613 0.96561 0.94839 0.94068 0.92947 0.88824 0.86930 0.83938 0.86868 0.93526 0.91954 0.88788 0.90805 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.64 8.65 127.77 1.11 9.74 16 2 N -0.60 -30.64 3.17 -738.77 -2.34 -32.98 16 3 C -0.27 -15.63 9.68 84.04 0.81 -14.82 16 4 H 0.05 3.31 7.84 -2.91 -0.02 3.28 16 5 C -0.04 -2.43 5.14 84.86 0.44 -2.00 16 6 N -0.93 -55.35 10.55 21.65 0.23 -55.12 16 7 Si 0.96 47.89 29.57 68.60 2.03 49.92 16 8 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 9 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 11 C 0.36 15.02 7.33 170.96 1.25 16.27 16 12 N -0.62 -23.97 3.57 -804.16 -2.87 -26.84 16 13 C 0.50 21.06 9.67 87.29 0.84 21.90 16 14 O -0.58 -29.99 18.03 -3.04 -0.05 -30.04 16 15 C -0.14 -4.01 8.05 30.12 0.24 -3.77 16 16 C 0.12 3.50 1.91 2.97 0.01 3.51 16 17 C -0.15 -4.05 7.98 30.87 0.25 -3.80 16 18 C -0.13 -2.79 8.08 31.24 0.25 -2.54 16 19 C -0.11 -2.14 7.98 30.87 0.25 -1.89 16 20 H 0.02 0.82 5.53 -2.39 -0.01 0.80 16 21 H 0.02 0.84 7.22 -2.39 -0.02 0.82 16 22 H 0.03 1.33 7.49 -2.38 -0.02 1.31 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 25 H 0.09 3.25 7.86 -2.38 -0.02 3.23 16 26 H 0.11 2.99 8.14 -2.39 -0.02 2.98 16 27 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.11 2.47 8.14 -2.38 -0.02 2.46 16 29 H 0.05 1.77 5.85 -2.39 -0.01 1.75 16 30 H 0.06 1.57 7.79 -2.39 -0.02 1.55 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -73.92 275.43 3.53 -70.40 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.09 Total: 2.06 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 5.45 Total: 22.61 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -4.98 Total: -114.94 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -73.92 3.53 -70.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743359261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.298 kcal (2) G-P(sol) polarization free energy of solvation -73.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds