Wall clock time and date at job start Sun Mar 29 2020 21:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00064 * 2 1 4 4 C 1.53509 * 114.16912 * 149.99926 * 3 2 1 5 5 N 1.47481 * 87.92936 * 87.81524 * 4 3 2 6 6 C 1.46899 * 111.00017 * 138.70362 * 5 4 3 7 7 C 1.52997 * 109.47254 * 169.99694 * 6 5 4 8 8 H 1.09004 * 109.47346 * 305.00031 * 7 6 5 9 9 C 1.47201 * 109.47375 * 64.99699 * 7 6 5 10 10 N 5.41917 * 124.60093 * 290.51390 * 2 1 3 11 11 C 1.52997 * 109.47504 * 184.99955 * 7 6 5 12 12 C 1.50691 * 109.47514 * 175.00045 * 11 7 6 13 13 H 1.08007 * 120.00409 * 0.02562 * 12 11 7 14 14 C 1.37880 * 120.00516 * 180.02562 * 12 11 7 15 15 N 1.31515 * 120.00330 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99687 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.46919 * 89.99718 * 16 14 12 18 18 H 1.48496 * 109.47107 * 210.00256 * 16 14 12 19 19 H 1.48506 * 109.46896 * 330.00252 * 16 14 12 20 20 C 1.47477 * 87.83990 * 27.00857 * 5 4 3 21 21 H 1.08992 * 109.47430 * 59.99922 * 1 2 3 22 22 H 1.08999 * 109.47138 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46914 * 299.99682 * 1 2 3 24 24 H 1.09003 * 113.25375 * 17.04970 * 3 2 1 25 25 H 1.09000 * 113.47746 * 333.04854 * 4 3 2 26 26 H 1.09000 * 113.47388 * 202.57488 * 4 3 2 27 27 H 1.09002 * 109.47043 * 289.99765 * 6 5 4 28 28 H 1.09001 * 109.47354 * 49.99826 * 6 5 4 29 29 H 1.09003 * 109.46810 * 294.99909 * 11 7 6 30 30 H 1.08998 * 109.47247 * 54.99778 * 11 7 6 31 31 H 0.96996 * 119.99676 * 179.97438 * 15 14 12 32 32 H 1.09000 * 113.47846 * 87.75378 * 20 5 4 33 33 H 1.08998 * 113.47506 * 218.22798 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3740 1.3863 0.7003 5 7 3.9967 1.0290 -0.5880 6 6 5.2090 1.8240 -0.8251 7 6 5.9598 1.2611 -2.0335 8 1 6.1591 0.2011 -1.8761 9 6 5.1395 1.4315 -3.2438 10 7 4.5064 1.5632 -4.1778 11 6 7.2835 2.0088 -2.2052 12 6 8.0779 1.3749 -3.3178 13 1 7.6785 0.5240 -3.8498 14 6 9.3148 1.8811 -3.6569 15 7 10.0083 1.3276 -4.6277 16 14 10.0055 3.3532 -2.7375 17 1 10.7939 2.8825 -1.5705 18 1 10.8829 4.1361 -3.6444 19 1 8.8887 4.2113 -2.2667 20 6 2.8293 1.6335 -1.2563 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.3107 2.0880 0.2936 25 1 3.5107 0.6300 1.4732 26 1 3.6279 2.3898 1.0417 27 1 4.9318 2.8600 -1.0198 28 1 5.8510 1.7789 0.0547 29 1 7.0826 3.0516 -2.4507 30 1 7.8530 1.9573 -1.2772 31 1 10.8783 1.6840 -4.8664 32 1 2.9377 2.7029 -1.4369 33 1 2.5044 1.0866 -2.1414 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759051133.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:32 Heat of formation + Delta-G solvation = -6.794991 kcal Electronic energy + Delta-G solvation = -15083.890198 eV Core-core repulsion = 12531.223385 eV Total energy + Delta-G solvation = -2552.666814 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32623 -38.45060 -37.31734 -35.62250 -34.04679 -30.68142 -27.95796 -27.15043 -26.65795 -23.87294 -23.24767 -20.92600 -18.95782 -18.45855 -17.61963 -17.13079 -16.42764 -16.26495 -15.53990 -15.34454 -15.24169 -14.76562 -14.50253 -14.09107 -13.95728 -13.50395 -13.40368 -13.11440 -12.58424 -12.52182 -12.43740 -12.18868 -11.99865 -11.71236 -11.66662 -11.36613 -11.25493 -10.73337 -10.46622 -9.78219 -8.24998 -6.31327 1.42753 1.45818 1.56302 1.95119 2.00180 2.41287 2.64301 3.10820 3.17740 3.25058 3.44996 3.87728 4.03454 4.23075 4.33757 4.40083 4.54139 4.57591 4.63264 4.68498 4.72452 4.85885 4.87195 4.89964 4.93807 5.22305 5.37756 5.48494 5.63274 6.06059 6.25963 6.34747 6.74619 6.80752 7.33124 8.92373 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.051600 B = 0.005760 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.509092 B = 4859.658774 C = 5155.609248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.385 6.385 3 C 0.064 3.936 4 C 0.005 3.995 5 N -0.488 5.488 6 C 0.032 3.968 7 C 0.026 3.974 8 H 0.108 0.892 9 C 0.253 3.747 10 N -0.510 5.510 11 C -0.001 4.001 12 C -0.535 4.535 13 H 0.023 0.977 14 C 0.001 3.999 15 N -0.956 5.956 16 Si 0.953 3.047 17 H -0.256 1.256 18 H -0.295 1.295 19 H -0.235 1.235 20 C -0.028 4.028 21 H 0.043 0.957 22 H 0.093 0.907 23 H 0.062 0.938 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.086 0.914 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 4.357 16.971 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.304 6.304 3 C 0.005 3.995 4 C -0.123 4.123 5 N -0.211 5.211 6 C -0.097 4.097 7 C 0.004 3.996 8 H 0.126 0.874 9 C -0.063 4.063 10 N -0.187 5.187 11 C -0.039 4.039 12 C -0.573 4.573 13 H 0.042 0.958 14 C -0.195 4.195 15 N -0.596 5.596 16 Si 0.776 3.224 17 H -0.180 1.180 18 H -0.221 1.221 19 H -0.158 1.158 20 C -0.157 4.157 21 H 0.061 0.939 22 H 0.111 0.889 23 H 0.081 0.919 24 H 0.129 0.871 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.241 3.694 15.326 22.635 hybrid contribution 0.703 1.038 -0.368 1.307 sum -15.538 4.732 14.958 22.081 Atomic orbital electron populations 1.23016 0.79516 1.03759 1.00931 1.87944 1.21298 1.26810 1.94332 1.23269 0.95037 0.86026 0.95150 1.24189 0.91424 1.02971 0.93761 1.68942 1.01046 1.44863 1.06218 1.22807 0.93675 0.95728 0.97485 1.19026 0.91899 1.03588 0.85060 0.87394 1.29651 0.91306 0.91054 0.94251 1.80991 1.14122 1.11292 1.12311 1.19583 0.91187 0.95746 0.97434 1.21412 1.02754 1.15190 1.17900 0.95828 1.26100 0.97172 1.00450 0.95774 1.70102 1.13876 1.43746 1.31922 0.85619 0.79228 0.78935 0.78649 1.18020 1.22118 1.15823 1.24508 0.93129 0.99063 0.99025 0.93874 0.88894 0.91914 0.87113 0.88577 0.87209 0.91856 0.86191 0.95273 0.91750 0.92614 0.89592 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.85 113.37 1.23 1.59 16 2 O -0.39 -8.97 10.76 -148.98 -1.60 -10.58 16 3 C 0.06 1.22 4.65 30.94 0.14 1.37 16 4 C 0.00 0.08 7.52 83.58 0.63 0.71 16 5 N -0.49 -12.69 6.22 -928.32 -5.77 -18.46 16 6 C 0.03 0.83 4.37 86.30 0.38 1.21 16 7 C 0.03 0.95 2.42 -12.60 -0.03 0.92 16 8 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 9 C 0.25 10.77 12.55 89.44 1.12 11.89 16 10 N -0.51 -23.63 18.54 20.01 0.37 -23.26 16 11 C 0.00 -0.02 3.49 29.84 0.10 0.08 16 12 C -0.53 -29.78 9.15 25.60 0.23 -29.54 16 13 H 0.02 1.50 7.84 -2.91 -0.02 1.48 16 14 C 0.00 0.08 5.47 84.66 0.46 0.55 16 15 N -0.96 -60.22 13.96 21.45 0.30 -59.92 16 16 Si 0.95 41.73 27.47 68.60 1.88 43.61 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 19 H -0.24 -9.11 6.54 99.48 0.65 -8.46 16 20 C -0.03 -0.70 6.32 83.58 0.53 -0.17 16 21 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.11 1.40 7.88 -2.39 -0.02 1.39 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.11 1.32 7.91 -2.39 -0.02 1.30 16 27 H 0.06 1.46 7.30 -2.39 -0.02 1.45 16 28 H 0.12 2.43 8.08 -2.39 -0.02 2.41 16 29 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 30 H 0.06 2.33 7.57 -2.39 -0.02 2.32 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.09 1.94 7.42 -2.39 -0.02 1.92 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -73.50 282.83 1.01 -72.49 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.03 Total: 7.50 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.80 Total: -11.39 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.10 Total: -101.64 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.60 Total: -10.58 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.88 Total: 43.61 kcal Total: -73.50 1.01 -72.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759051133.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.696 kcal (2) G-P(sol) polarization free energy of solvation -73.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds