Wall clock time and date at job start Sun Mar 29 2020 21:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.28009 * 120.00048 * 240.00079 * 4 2 1 6 6 N 1.40099 * 120.00071 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00166 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00142 * 180.02562 * 7 6 5 10 10 C 1.52999 * 117.49742 * 248.62034 * 9 7 6 11 11 C 1.52994 * 60.00336 * 252.51219 * 10 9 7 12 12 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 13 13 C 1.50703 * 109.46801 * 65.00219 * 12 2 1 14 14 H 1.07998 * 120.00413 * 0.02562 * 13 12 2 15 15 C 1.37878 * 119.99680 * 179.97438 * 13 12 2 16 16 N 1.31523 * 119.99583 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00273 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47042 * 89.99722 * 17 15 13 19 19 H 1.48506 * 109.47062 * 209.99913 * 17 15 13 20 20 H 1.48495 * 109.46994 * 329.99733 * 17 15 13 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.08006 * 119.99953 * 59.99820 * 4 2 1 25 25 H 0.97005 * 119.99538 * 0.02562 * 6 5 4 26 26 H 1.08996 * 115.55179 * 34.33101 * 9 7 6 27 27 H 1.09001 * 117.49871 * 0.02562 * 10 9 7 28 28 H 1.09002 * 117.49800 * 145.01974 * 10 9 7 29 29 H 1.09001 * 117.50066 * 252.51597 * 11 10 9 30 30 H 1.08996 * 117.51779 * 107.48193 * 11 10 9 31 31 H 1.09002 * 109.47069 * 184.99942 * 12 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 12 2 1 33 33 H 0.97001 * 119.99531 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2348 -0.7486 3.2173 7 6 4.0100 -0.0938 4.1042 8 8 4.3034 1.0674 3.9121 9 6 4.5123 -0.8042 5.3348 10 6 3.9495 -0.3597 6.6863 11 6 5.3880 -0.0064 6.3031 12 6 2.0401 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 1 1.0808 0.9745 -2.3757 15 6 1.9933 -0.4018 -3.7282 16 7 1.6458 0.2777 -4.7993 17 14 2.9637 -1.9885 -3.9027 18 1 2.0244 -3.1327 -4.0199 19 1 3.8127 -1.9183 -5.1191 20 1 3.8253 -2.1757 -2.7078 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7714 -1.7444 1.4014 25 1 3.0004 -1.6773 3.3708 26 1 4.7386 -1.8627 5.2070 27 1 3.2157 0.4463 6.6854 28 1 3.8053 -1.1259 7.4480 29 1 6.1902 -0.5402 6.8126 30 1 5.6011 1.0322 6.0499 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.8938 -0.0449 -5.6799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765992902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:12 Heat of formation + Delta-G solvation = 15.486046 kcal Electronic energy + Delta-G solvation = -14533.708347 eV Core-core repulsion = 11982.007712 eV Total energy + Delta-G solvation = -2551.700635 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88359 -37.37697 -36.11914 -34.82400 -32.41659 -30.93458 -27.59597 -25.27280 -23.59165 -22.72510 -21.34361 -20.42017 -19.07674 -17.69686 -17.21827 -16.60131 -15.42123 -14.93762 -14.53092 -14.24048 -13.60291 -13.35358 -12.83438 -12.75289 -12.31035 -11.86328 -11.74227 -11.25309 -11.10918 -10.94441 -10.85090 -10.80336 -10.21036 -10.05255 -9.91144 -9.83722 -9.62672 -9.15966 -8.61087 -8.55042 -6.05091 -4.03251 2.00551 2.55936 2.80428 3.28942 3.37563 3.40254 3.61559 4.35462 4.43805 4.47348 4.57936 4.83468 5.07171 5.24019 5.27935 5.29424 5.43097 5.64040 5.84188 5.86900 5.97154 6.05771 6.37864 6.63540 6.77311 6.94756 7.16764 7.20103 7.31731 7.70938 7.75272 8.51080 8.55796 8.99667 9.56539 11.08020 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045555 B = 0.004757 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.500059 B = 5884.529918 C = 6135.951133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.032 4.032 3 H 0.086 0.914 4 C 0.102 3.898 5 N -0.254 5.254 6 N -0.590 5.590 7 C 0.557 3.443 8 O -0.509 6.509 9 C -0.193 4.193 10 C -0.152 4.152 11 C -0.145 4.145 12 C -0.003 4.003 13 C -0.516 4.516 14 H 0.077 0.923 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.037 0.963 24 H 0.102 0.898 25 H 0.380 0.620 26 H 0.125 0.875 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -6.804 20.085 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.054 4.054 3 H 0.104 0.896 4 C -0.113 4.113 5 N -0.056 5.056 6 N -0.331 5.331 7 C 0.344 3.656 8 O -0.382 6.382 9 C -0.215 4.215 10 C -0.190 4.190 11 C -0.182 4.182 12 C -0.041 4.041 13 C -0.554 4.554 14 H 0.095 0.905 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.192 1.192 21 H 0.098 0.902 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.217 0.783 26 H 0.143 0.857 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.320 -5.144 20.114 21.026 hybrid contribution 0.098 -2.415 -0.306 2.437 sum 3.419 -7.559 19.809 21.476 Atomic orbital electron populations 1.21686 0.93880 1.01474 1.01702 1.20175 0.95813 1.00223 0.89146 0.89597 1.26761 0.92100 0.97824 0.94612 1.74587 1.11756 1.24350 0.94890 1.47043 1.51478 1.13666 1.20867 1.19478 0.77246 0.86586 0.82317 1.90714 1.55551 1.16571 1.75355 1.22150 1.08572 1.00874 0.89928 1.22974 0.97872 1.03569 0.94576 1.22983 0.93729 1.01908 0.99582 1.19606 0.96295 0.95863 0.92370 1.21051 1.35792 1.09766 0.88790 0.90463 1.24993 0.95501 0.96945 0.95899 1.69908 1.46867 1.39203 0.98054 0.86822 0.80664 0.84273 0.77776 1.20278 1.21375 1.19156 0.90208 0.93199 0.94341 0.88128 0.78292 0.85696 0.88083 0.87641 0.87709 0.87181 0.96370 0.96573 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.99 37.16 0.33 -1.88 16 2 C -0.03 -0.63 2.75 -91.77 -0.25 -0.88 16 3 H 0.09 1.81 8.11 -51.93 -0.42 1.39 16 4 C 0.10 1.69 9.65 -13.87 -0.13 1.56 16 5 N -0.25 -4.61 10.92 32.67 0.36 -4.25 16 6 N -0.59 -8.54 6.25 31.22 0.20 -8.35 16 7 C 0.56 8.30 7.73 -10.99 -0.08 8.21 16 8 O -0.51 -9.95 16.59 5.54 0.09 -9.86 16 9 C -0.19 -1.86 6.19 -91.77 -0.57 -2.43 16 10 C -0.15 -1.20 10.23 -26.74 -0.27 -1.47 16 11 C -0.14 -1.25 10.04 -26.73 -0.27 -1.52 16 12 C 0.00 -0.06 3.50 -27.88 -0.10 -0.16 16 13 C -0.52 -14.15 8.96 -34.44 -0.31 -14.46 16 14 H 0.08 2.26 7.30 -52.49 -0.38 1.88 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 17 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 21 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.10 1.34 8.00 -52.48 -0.42 0.92 16 25 H 0.38 3.96 8.63 -182.59 -1.58 2.38 16 26 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.16 7.67 -51.93 -0.40 0.76 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 32 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 288.06 15.07 4.34 4.34 Total: -1.00 -33.73 288.06 -6.69 -40.42 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.03 Total: -1.17 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -1.75 Total: -11.18 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 1.33 Total: -39.19 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -33.73 -6.69 -40.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.907 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds