Wall clock time and date at job start Sun Mar 29 2020 21:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.28009 * 120.00048 * 240.00079 * 4 2 1 6 6 N 1.40099 * 120.00071 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00166 * 179.97438 * 6 5 4 8 8 O 1.21298 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00142 * 180.02562 * 7 6 5 10 10 C 1.52999 * 117.49742 * 248.62034 * 9 7 6 11 11 C 1.52994 * 60.00336 * 252.51219 * 10 9 7 12 12 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 13 13 C 1.50703 * 109.46801 * 65.00219 * 12 2 1 14 14 H 1.07998 * 120.00413 * 0.02562 * 13 12 2 15 15 C 1.37878 * 119.99680 * 179.97438 * 13 12 2 16 16 N 1.31523 * 119.99583 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00273 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47042 * 89.99722 * 17 15 13 19 19 H 1.48506 * 109.47062 * 209.99913 * 17 15 13 20 20 H 1.48495 * 109.46994 * 329.99733 * 17 15 13 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.08006 * 119.99953 * 59.99820 * 4 2 1 25 25 H 0.97005 * 119.99538 * 0.02562 * 6 5 4 26 26 H 1.08996 * 115.55179 * 34.33101 * 9 7 6 27 27 H 1.09001 * 117.49871 * 0.02562 * 10 9 7 28 28 H 1.09002 * 117.49800 * 145.01974 * 10 9 7 29 29 H 1.09001 * 117.50066 * 252.51597 * 11 10 9 30 30 H 1.08996 * 117.51779 * 107.48193 * 11 10 9 31 31 H 1.09002 * 109.47069 * 184.99942 * 12 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 12 2 1 33 33 H 0.97001 * 119.99531 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2348 -0.7486 3.2173 7 6 4.0100 -0.0938 4.1042 8 8 4.3034 1.0674 3.9121 9 6 4.5123 -0.8042 5.3348 10 6 3.9495 -0.3597 6.6863 11 6 5.3880 -0.0064 6.3031 12 6 2.0401 -0.7213 -1.2492 13 6 1.6414 0.0570 -2.4766 14 1 1.0808 0.9745 -2.3757 15 6 1.9933 -0.4018 -3.7282 16 7 1.6458 0.2777 -4.7993 17 14 2.9637 -1.9885 -3.9027 18 1 2.0244 -3.1327 -4.0199 19 1 3.8127 -1.9183 -5.1191 20 1 3.8253 -2.1757 -2.7078 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7714 -1.7444 1.4014 25 1 3.0004 -1.6773 3.3708 26 1 4.7386 -1.8627 5.2070 27 1 3.2157 0.4463 6.6854 28 1 3.8053 -1.1259 7.4480 29 1 6.1902 -0.5402 6.8126 30 1 5.6011 1.0322 6.0499 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.8938 -0.0449 -5.6799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765992902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:12 Heat of formation + Delta-G solvation = -8.215612 kcal Electronic energy + Delta-G solvation = -14534.736128 eV Core-core repulsion = 11982.007712 eV Total energy + Delta-G solvation = -2552.728416 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98625 -38.65646 -37.09606 -36.33654 -34.37854 -32.38205 -29.42502 -26.45589 -25.09525 -23.34910 -22.88423 -21.57015 -20.48488 -19.12229 -18.43664 -18.28615 -16.41734 -16.31581 -15.94856 -15.44856 -15.25875 -14.93999 -14.50454 -13.98483 -13.66126 -13.34066 -12.88293 -12.79423 -12.53133 -12.45626 -11.87311 -11.75369 -11.60553 -11.57917 -11.52447 -11.31408 -11.19774 -10.86328 -10.71428 -9.90675 -8.23697 -6.26989 0.79284 1.38278 1.41895 1.47651 1.52274 1.69164 2.40096 2.87265 3.11745 3.46563 3.75461 3.84847 3.94158 4.03077 4.17939 4.40191 4.47788 4.65590 4.72860 4.85363 4.95730 5.02060 5.05330 5.19786 5.21389 5.35686 5.47487 5.59841 5.70047 6.13413 6.33529 6.53737 6.80467 7.36362 7.43720 8.92902 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.045555 B = 0.004757 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.500059 B = 5884.529918 C = 6135.951133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.031 4.031 3 H 0.054 0.946 4 C 0.112 3.888 5 N -0.299 5.299 6 N -0.578 5.578 7 C 0.548 3.452 8 O -0.569 6.569 9 C -0.195 4.195 10 C -0.136 4.136 11 C -0.150 4.150 12 C 0.002 3.998 13 C -0.521 4.521 14 H 0.038 0.962 15 C 0.003 3.997 16 N -0.953 5.953 17 Si 0.948 3.052 18 H -0.258 1.258 19 H -0.291 1.291 20 H -0.251 1.251 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.145 0.855 25 H 0.404 0.596 26 H 0.162 0.838 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.011 0.989 32 H 0.039 0.961 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -10.231 22.539 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.052 4.052 3 H 0.072 0.928 4 C -0.102 4.102 5 N -0.101 5.101 6 N -0.321 5.321 7 C 0.338 3.662 8 O -0.446 6.446 9 C -0.217 4.217 10 C -0.173 4.173 11 C -0.187 4.187 12 C -0.037 4.037 13 C -0.559 4.559 14 H 0.057 0.943 15 C -0.193 4.193 16 N -0.594 5.594 17 Si 0.771 3.229 18 H -0.183 1.183 19 H -0.217 1.217 20 H -0.174 1.174 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.161 0.839 25 H 0.244 0.756 26 H 0.180 0.820 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.100 0.900 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.815 -8.606 22.594 24.477 hybrid contribution -0.095 -1.230 -1.024 1.603 sum 3.719 -9.837 21.570 23.997 Atomic orbital electron populations 1.21596 0.92327 1.02885 1.01228 1.19949 0.97177 0.98490 0.89585 0.92780 1.26475 0.91534 0.99146 0.93020 1.74454 1.12328 1.26838 0.96490 1.46908 1.50927 1.14690 1.19561 1.20588 0.76184 0.86183 0.83295 1.90687 1.57712 1.19339 1.76826 1.22238 1.09518 1.02079 0.87904 1.23107 0.96660 1.03671 0.93836 1.23084 0.95347 1.00744 0.99549 1.19508 0.95864 0.96485 0.91820 1.21387 1.34677 1.08871 0.90976 0.94344 1.25972 0.96846 1.01029 0.95458 1.70074 1.48932 1.41635 0.98761 0.85697 0.79371 0.79776 0.78020 1.18307 1.21683 1.17429 0.93177 0.90764 0.92345 0.83865 0.75564 0.82040 0.89730 0.83998 0.84630 0.90026 0.97104 0.94254 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.99 71.98 0.65 -3.44 16 2 C -0.03 -1.17 2.75 -11.54 -0.03 -1.20 16 3 H 0.05 2.37 8.11 -2.39 -0.02 2.35 16 4 C 0.11 3.48 9.65 88.67 0.86 4.33 16 5 N -0.30 -10.48 10.92 -50.46 -0.55 -11.03 16 6 N -0.58 -15.51 6.25 -173.52 -1.08 -16.59 16 7 C 0.55 15.70 7.73 87.66 0.68 16.38 16 8 O -0.57 -22.71 16.59 -3.08 -0.05 -22.76 16 9 C -0.20 -3.19 6.19 -11.54 -0.07 -3.26 16 10 C -0.14 -1.70 10.23 30.59 0.31 -1.39 16 11 C -0.15 -2.26 10.04 30.59 0.31 -1.96 16 12 C 0.00 0.08 3.50 29.85 0.10 0.18 16 13 C -0.52 -29.25 8.96 25.60 0.23 -29.02 16 14 H 0.04 2.38 7.30 -2.91 -0.02 2.36 16 15 C 0.00 0.19 5.47 84.65 0.46 0.65 16 16 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 17 Si 0.95 43.39 27.47 68.60 1.88 45.27 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 21 H 0.05 1.96 6.95 -2.39 -0.02 1.94 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.14 3.14 8.00 -2.91 -0.02 3.12 16 25 H 0.40 6.94 8.63 -213.31 -1.84 5.10 16 26 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.72 7.67 -2.39 -0.02 1.71 16 31 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 32 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 33 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.51 288.06 3.19 -74.32 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -0.80 Total: 8.80 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.49 Total: -18.72 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.34 Total: -86.91 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -77.51 3.19 -74.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.105 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds