Wall clock time and date at job start Sun Mar 29 2020 21:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00260 * 2 1 3 5 5 N 1.28014 * 119.99900 * 119.72298 * 4 2 1 6 6 N 1.40097 * 119.99933 * 180.27947 * 5 4 2 7 7 C 1.34777 * 119.99958 * 180.02562 * 6 5 4 8 8 O 1.21303 * 120.00244 * 359.97438 * 7 6 5 9 9 C 1.50708 * 119.99954 * 179.97438 * 7 6 5 10 10 C 1.52994 * 117.49825 * 248.74432 * 9 7 6 11 11 C 1.52997 * 117.49584 * 180.08204 * 9 7 6 12 12 C 1.52995 * 109.47329 * 120.00599 * 2 1 3 13 13 C 1.50709 * 109.46758 * 294.99974 * 12 2 1 14 14 H 1.07991 * 119.99974 * 359.97438 * 13 12 2 15 15 C 1.37876 * 119.99611 * 180.02562 * 13 12 2 16 16 N 1.31519 * 120.00189 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99925 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47240 * 89.99714 * 17 15 13 19 19 H 1.48496 * 109.47563 * 210.00112 * 17 15 13 20 20 H 1.48506 * 109.47205 * 329.99875 * 17 15 13 21 21 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.46996 * 299.99741 * 1 2 3 23 23 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 24 24 H 1.08002 * 120.00299 * 300.00451 * 4 2 1 25 25 H 0.97000 * 120.00306 * 359.97438 * 6 5 4 26 26 H 1.09000 * 115.54909 * 34.41676 * 9 7 6 27 27 H 1.08998 * 117.49822 * 0.02562 * 10 9 7 28 28 H 1.09004 * 117.49838 * 145.02343 * 10 9 7 29 29 H 1.09004 * 117.50006 * 214.97390 * 11 9 7 30 30 H 1.08996 * 117.50368 * 359.97438 * 11 9 7 31 31 H 1.08998 * 109.47546 * 54.99854 * 12 2 1 32 32 H 1.09001 * 109.47447 * 175.00384 * 12 2 1 33 33 H 0.96999 * 119.99804 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7639 -0.0866 -2.0758 6 7 3.2261 -0.7453 -3.2227 7 6 3.9967 -0.0888 -4.1123 8 8 4.2898 1.0725 -3.9203 9 6 4.4944 -0.7975 -5.3458 10 6 5.9943 -1.0845 -5.4388 11 6 5.3666 0.0016 -6.3161 12 6 2.0400 -0.7213 1.2491 13 6 1.6413 0.0569 2.4766 14 1 1.0807 0.9744 2.3757 15 6 1.9933 -0.4019 3.7282 16 7 2.6765 -1.5190 3.8509 17 14 1.4998 0.5630 5.2496 18 1 0.1727 0.0949 5.7237 19 1 2.5094 0.3532 6.3181 20 1 1.4248 2.0083 4.9164 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.7714 -1.7443 -1.4016 25 1 2.9920 -1.6741 -3.3761 26 1 3.8135 -1.5347 -5.7713 27 1 6.6211 -0.7612 -4.6078 28 1 6.3002 -2.0104 -5.9260 29 1 5.2599 -0.2103 -7.3800 30 1 5.5801 1.0399 -6.0627 31 1 1.6055 -1.7199 1.2950 32 1 3.1264 -0.7995 1.2055 33 1 2.9244 -1.8416 4.7315 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765992904.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:13 Heat of formation + Delta-G solvation = -10.867317 kcal Electronic energy + Delta-G solvation = -14492.302487 eV Core-core repulsion = 11939.459085 eV Total energy + Delta-G solvation = -2552.843403 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.97951 -38.61891 -37.08062 -36.31487 -34.36092 -32.26218 -28.88868 -26.48751 -25.31772 -23.36918 -23.07942 -21.57011 -20.45584 -18.90973 -18.41099 -18.05741 -16.51611 -16.38618 -16.01695 -15.42896 -15.00081 -14.83690 -14.48468 -13.75201 -13.66870 -13.23987 -12.80804 -12.74068 -12.52940 -12.46276 -12.25052 -11.80072 -11.60007 -11.55771 -11.35876 -11.29012 -11.17898 -10.84681 -10.51591 -9.88069 -8.16357 -6.24915 0.79701 1.43556 1.44873 1.49471 1.55806 1.68838 2.45057 2.87396 3.18380 3.47355 3.76310 3.86274 3.93558 4.05426 4.17386 4.44750 4.56354 4.68491 4.72612 4.85691 4.98895 5.02593 5.20304 5.21152 5.28185 5.47160 5.52762 5.72422 5.86567 6.13699 6.27136 6.53467 6.89478 7.43121 7.43333 8.95665 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.049948 B = 0.004414 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.444841 B = 6341.412146 C = 6525.651622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 H 0.058 0.942 4 C 0.113 3.887 5 N -0.299 5.299 6 N -0.579 5.579 7 C 0.548 3.452 8 O -0.569 6.569 9 C -0.194 4.194 10 C -0.142 4.142 11 C -0.145 4.145 12 C 0.041 3.959 13 C -0.530 4.530 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.960 3.040 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.266 1.266 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.134 0.866 25 H 0.402 0.598 26 H 0.164 0.836 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.012 0.988 32 H -0.017 1.017 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 -3.791 -18.291 18.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.057 4.057 3 H 0.076 0.924 4 C -0.101 4.101 5 N -0.101 5.101 6 N -0.322 5.322 7 C 0.337 3.663 8 O -0.446 6.446 9 C -0.216 4.216 10 C -0.179 4.179 11 C -0.182 4.182 12 C 0.003 3.997 13 C -0.568 4.568 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.785 3.215 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.191 1.191 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.151 0.849 25 H 0.243 0.757 26 H 0.181 0.819 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.101 0.899 31 H 0.030 0.970 32 H 0.001 0.999 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.076 -2.274 -18.401 18.572 hybrid contribution -0.413 -0.850 1.275 1.587 sum 0.663 -3.124 -17.126 17.421 Atomic orbital electron populations 1.21585 0.92022 1.02524 1.01651 1.20134 0.97385 0.98502 0.89678 0.92364 1.26521 0.91486 0.98862 0.93201 1.74448 1.12421 1.26748 0.96457 1.46941 1.51408 1.14545 1.19305 1.20604 0.76152 0.86187 0.83321 1.90677 1.57559 1.19128 1.77193 1.22247 0.97573 1.06232 0.95579 1.23121 0.90242 1.02194 1.02350 1.23097 1.00028 0.97187 0.97918 1.18955 0.94200 0.95427 0.91165 1.21599 1.34739 1.08742 0.91741 0.91721 1.25884 0.95158 0.96054 1.02501 1.70086 1.40079 1.22904 1.24339 0.85519 0.78105 0.79218 0.78661 1.19437 1.21273 1.19087 0.91696 0.92076 0.92219 0.84875 0.75726 0.81851 0.90126 0.84030 0.84357 0.89942 0.96957 0.99871 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.04 8.99 71.98 0.65 -3.40 16 2 C -0.04 -1.45 2.75 -11.54 -0.03 -1.48 16 3 H 0.06 2.58 8.11 -2.39 -0.02 2.56 16 4 C 0.11 3.93 9.66 88.67 0.86 4.79 16 5 N -0.30 -11.27 10.92 -50.46 -0.55 -11.83 16 6 N -0.58 -17.05 6.25 -173.51 -1.08 -18.14 16 7 C 0.55 16.70 7.73 87.66 0.68 17.38 16 8 O -0.57 -23.49 16.59 -3.10 -0.05 -23.54 16 9 C -0.19 -3.47 6.19 -11.54 -0.07 -3.54 16 10 C -0.14 -2.12 10.24 30.62 0.31 -1.81 16 11 C -0.14 -2.34 10.05 30.62 0.31 -2.03 16 12 C 0.04 2.06 4.43 29.85 0.13 2.19 16 13 C -0.53 -29.16 8.41 25.60 0.22 -28.94 16 14 H 0.06 3.41 7.06 -2.92 -0.02 3.39 16 15 C 0.00 0.09 5.46 84.65 0.46 0.55 16 16 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.06 2.22 6.95 -2.39 -0.02 2.20 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.13 3.64 8.00 -2.91 -0.02 3.61 16 25 H 0.40 8.16 8.63 -213.32 -1.84 6.32 16 26 H 0.16 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 1.81 7.67 -2.39 -0.02 1.79 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H -0.02 -0.98 8.14 -2.39 -0.02 -0.99 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.47 291.66 3.39 -71.09 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.74 Total: 8.36 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 3.51 Total: -16.28 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -1.35 Total: -85.49 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -74.47 3.39 -71.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765992904.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.219 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds