Wall clock time and date at job start Sun Mar 29 2020 21:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00068 * 2 1 4 4 H 1.48507 * 109.46949 * 240.00312 * 3 2 1 5 5 H 1.48501 * 109.46983 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47397 * 120.00074 * 3 2 1 7 7 C 1.37878 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00489 * 359.97438 * 7 2 1 10 10 N 1.46489 * 109.47432 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00229 * 180.02562 * 10 9 7 12 12 O 1.21585 * 119.99834 * 5.18658 * 11 10 9 13 13 N 1.34776 * 120.00170 * 185.19569 * 11 10 9 14 14 C 1.45318 * 118.82979 * 175.25060 * 13 11 10 15 15 C 1.51711 * 112.00225 * 235.89179 * 14 13 11 16 16 C 1.51283 * 112.95051 * 318.23018 * 15 14 13 17 17 H 1.08998 * 114.33491 * 163.72881 * 16 15 14 18 18 C 1.52110 * 120.85286 * 308.63445 * 16 15 14 19 19 C 1.52016 * 120.67059 * 20.74160 * 16 15 14 20 20 H 1.08999 * 117.36100 * 142.89953 * 19 16 15 21 21 C 1.45534 * 118.83159 * 355.21744 * 13 11 10 22 22 H 0.96998 * 120.00374 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46509 * 59.99964 * 9 7 2 24 24 H 1.08998 * 109.47003 * 300.00619 * 9 7 2 25 25 H 0.97001 * 120.00433 * 0.02562 * 10 9 7 26 26 H 1.09006 * 108.97215 * 356.53359 * 14 13 11 27 27 H 1.08990 * 108.97814 * 115.23512 * 14 13 11 28 28 H 1.08991 * 108.78632 * 79.12994 * 15 14 13 29 29 H 1.08998 * 108.78188 * 197.45268 * 15 14 13 30 30 H 1.09002 * 117.53793 * 217.65146 * 18 16 15 31 31 H 1.09002 * 117.54396 * 2.84111 * 18 16 15 32 32 H 1.09003 * 109.21543 * 260.81943 * 21 13 11 33 33 H 1.09005 * 109.20863 * 20.14598 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5626 -5.1070 -0.0967 13 7 2.6251 -5.9062 0.1046 14 6 2.1073 -7.2601 0.2066 15 6 2.6151 -7.9710 1.4468 16 6 4.0820 -7.7152 1.7145 17 1 4.4057 -7.9710 2.7233 18 6 5.1216 -7.9225 0.6237 19 6 4.7801 -6.5054 1.1146 20 1 5.5294 -6.0044 1.7275 21 6 4.0511 -5.6155 0.1119 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 3.1567 -3.4354 -0.0002 26 1 1.0185 -7.2214 0.2411 27 1 2.4125 -7.8236 -0.6750 28 1 2.0371 -7.6327 2.3067 29 1 2.4644 -9.0434 1.3231 30 1 6.0848 -8.3394 0.9181 31 1 4.7647 -8.2143 -0.3640 32 1 4.4578 -5.7895 -0.8843 33 1 4.2028 -4.5706 0.3830 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854028277.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:18 Heat of formation + Delta-G solvation = -25.343378 kcal Electronic energy + Delta-G solvation = -15439.521978 eV Core-core repulsion = 12886.050846 eV Total energy + Delta-G solvation = -2553.471132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.65825 -39.44274 -36.28682 -35.46369 -34.40230 -32.55037 -29.29103 -27.53935 -25.69772 -24.25064 -22.41661 -21.64701 -20.19003 -18.76032 -18.12076 -17.44595 -16.72581 -16.68084 -16.37994 -15.40626 -15.14291 -15.09869 -14.72744 -14.11658 -13.92655 -13.63148 -13.29917 -12.90389 -12.73393 -12.66290 -12.29862 -12.20942 -11.88268 -11.50315 -11.24718 -10.84517 -10.79019 -10.70530 -10.03277 -9.39025 -8.28069 -6.45223 1.43562 1.48495 1.56440 1.77897 2.16514 2.39068 2.80162 3.06591 3.20620 3.72632 3.77226 3.92086 4.06017 4.19704 4.27960 4.48758 4.70700 4.80644 4.86424 4.98797 5.02834 5.10872 5.16477 5.21908 5.25740 5.32520 5.47419 5.59569 5.77509 5.84021 6.08850 6.65545 7.14829 7.24990 7.65509 8.84245 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.046030 B = 0.006088 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.150494 B = 4598.215659 C = 5043.330463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.284 3.716 10 N -0.724 5.724 11 C 0.687 3.313 12 O -0.647 6.647 13 N -0.619 5.619 14 C 0.122 3.878 15 C -0.098 4.098 16 C -0.137 4.137 17 H 0.112 0.888 18 C -0.157 4.157 19 C -0.178 4.178 20 H 0.127 0.873 21 C 0.135 3.865 22 H 0.269 0.731 23 H -0.015 1.015 24 H -0.016 1.016 25 H 0.403 0.597 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -14.365 2.228 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.161 3.839 10 N -0.379 5.379 11 C 0.388 3.612 12 O -0.530 6.530 13 N -0.356 5.356 14 C -0.001 4.001 15 C -0.136 4.136 16 C -0.156 4.156 17 H 0.130 0.870 18 C -0.194 4.194 19 C -0.197 4.197 20 H 0.145 0.855 21 C 0.013 3.987 22 H 0.078 0.922 23 H 0.003 0.997 24 H 0.002 0.998 25 H 0.241 0.759 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.812 -14.414 2.167 19.406 hybrid contribution 0.072 1.035 0.010 1.038 sum 12.884 -13.379 2.177 18.701 Atomic orbital electron populations 1.70139 1.08320 1.28690 1.49768 1.26080 0.95788 1.03894 0.93732 0.85173 0.77888 0.76405 0.79520 1.18622 1.20987 1.18587 1.21546 0.94238 0.90433 1.53245 0.89924 1.18425 0.88147 0.83420 0.93893 1.45531 1.10929 1.03890 1.77597 1.16373 0.84941 0.81887 0.78031 1.90805 1.16961 1.84598 1.60608 1.46509 1.06062 1.05623 1.77368 1.20835 0.99646 0.80538 0.99049 1.20727 0.94285 1.01573 0.97012 1.21534 0.93486 1.01156 0.99422 0.86971 1.23173 1.00016 0.97373 0.98788 1.22527 1.03580 0.90794 1.02806 0.85532 1.20938 0.78529 0.99668 0.99571 0.92185 0.99684 0.99759 0.75900 0.91230 0.90751 0.92598 0.87861 0.86674 0.88671 0.90260 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.56 -31.06 9.28 25.60 0.24 -30.83 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.28 16.37 5.43 85.63 0.47 16.83 16 10 N -0.72 -33.31 5.41 -482.32 -2.61 -35.92 16 11 C 0.69 30.97 8.21 179.05 1.47 32.44 16 12 O -0.65 -35.25 15.55 -3.99 -0.06 -35.31 16 13 N -0.62 -20.34 3.01 -848.51 -2.55 -22.89 16 14 C 0.12 3.41 6.05 86.18 0.52 3.93 16 15 C -0.10 -2.05 6.09 29.61 0.18 -1.86 16 16 C -0.14 -2.45 5.91 -11.97 -0.07 -2.53 16 17 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 18 C -0.16 -2.27 9.78 30.57 0.30 -1.97 16 19 C -0.18 -3.36 6.35 -10.98 -0.07 -3.43 16 20 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 21 C 0.14 3.33 6.16 86.43 0.53 3.86 16 22 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 23 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H 0.40 15.56 5.73 -92.71 -0.53 15.02 16 26 H 0.07 2.36 6.75 -2.38 -0.02 2.34 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 32 H 0.08 1.71 8.12 -2.39 -0.02 1.70 16 33 H 0.08 1.99 5.63 -2.38 -0.01 1.98 16 Total: -1.00 -73.35 272.22 1.69 -71.66 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.57 Total: 17.34 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 4.03 Total: 17.18 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.88 Total: -115.55 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.06 Total: -35.31 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -73.35 1.69 -71.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854028277.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.321 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds