Wall clock time and date at job start Sun Mar 29 2020 21:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35455 * 128.00942 * 2 1 4 4 O 1.34040 * 106.44488 * 180.23143 * 3 2 1 5 5 N 1.20928 * 111.56849 * 359.74308 * 4 3 2 6 6 C 1.30169 * 111.60324 * 0.02562 * 5 4 3 7 7 C 1.50706 * 126.80176 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.47237 * 90.01835 * 7 6 5 9 9 C 1.46898 * 111.00024 * 293.95164 * 8 7 6 10 10 C 1.46906 * 110.99498 * 170.00051 * 8 7 6 11 11 H 1.08996 * 109.46825 * 60.00655 * 10 8 7 12 12 C 1.52997 * 109.47302 * 299.99832 * 10 8 7 13 13 C 1.50708 * 109.46619 * 180.02562 * 10 8 7 14 14 H 1.07995 * 119.99755 * 0.02562 * 13 10 8 15 15 C 1.37873 * 119.99729 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.46755 * 90.00221 * 17 15 13 19 19 H 1.48498 * 109.46866 * 210.00208 * 17 15 13 20 20 H 1.48496 * 109.47178 * 330.00271 * 17 15 13 21 21 H 1.08999 * 109.47680 * 270.17312 * 1 2 3 22 22 H 1.09004 * 109.47149 * 30.17156 * 1 2 3 23 23 H 1.09002 * 109.47436 * 150.16964 * 1 2 3 24 24 H 1.07993 * 126.77459 * 359.95408 * 3 2 1 25 25 H 1.08996 * 109.46575 * 330.01781 * 7 6 5 26 26 H 1.08999 * 109.46743 * 210.02467 * 7 6 5 27 27 H 1.08994 * 109.47157 * 296.04850 * 9 8 7 28 28 H 1.09005 * 109.46959 * 56.05180 * 9 8 7 29 29 H 1.09004 * 109.46870 * 176.04285 * 9 8 7 30 30 H 1.09002 * 109.47153 * 180.02562 * 12 10 8 31 31 H 1.09001 * 109.46832 * 60.00356 * 12 10 8 32 32 H 1.09004 * 109.47261 * 300.00337 * 12 10 8 33 33 H 0.97002 * 119.99804 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5877 0.5746 -0.0052 5 7 3.5878 -0.6347 -0.0032 6 6 2.3776 -1.1140 0.0030 7 6 1.9826 -2.5684 0.0066 8 7 1.8601 -3.0391 1.3927 9 6 3.1641 -3.0294 2.0691 10 6 1.2507 -4.3748 1.4431 11 1 1.8716 -5.0785 0.8886 12 6 -0.1446 -4.3228 0.8176 13 6 1.1411 -4.8231 2.8778 14 1 1.4889 -4.1799 3.6725 15 6 0.5959 -6.0539 3.1757 16 7 0.1719 -6.8369 2.2078 17 14 0.4607 -6.6099 4.9539 18 1 -0.8451 -6.1739 5.5108 19 1 0.5568 -8.0903 5.0183 20 1 1.5627 -6.0073 5.7461 21 1 -0.3634 0.0031 1.0276 22 1 -0.3634 0.8885 -0.5165 23 1 -0.3634 -0.8915 -0.5112 24 1 2.0577 2.1093 -0.0007 25 1 2.7441 -3.1529 -0.5097 26 1 1.0264 -2.6864 -0.5031 27 1 3.8327 -3.7373 1.5793 28 1 3.5930 -2.0287 2.0170 29 1 3.0340 -3.3150 3.1130 30 1 -0.5968 -5.3139 0.8554 31 1 -0.0656 -3.9984 -0.2200 32 1 -0.7654 -3.6191 1.3721 33 1 -0.2120 -7.7027 2.4174 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878189333.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:47 Heat of formation + Delta-G solvation = 66.213502 kcal Electronic energy + Delta-G solvation = -15692.464534 eV Core-core repulsion = 13142.963606 eV Total energy + Delta-G solvation = -2549.500928 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.63901 -37.27493 -34.57907 -32.84103 -31.76573 -29.16555 -27.96841 -27.52019 -24.80313 -23.53565 -21.30966 -20.90958 -19.40751 -17.31804 -17.13410 -16.25002 -15.21752 -14.73004 -14.03346 -13.92240 -13.47317 -13.05801 -13.03484 -12.42862 -12.30479 -11.95461 -11.76875 -11.18194 -11.06298 -10.82050 -10.73392 -10.64167 -10.21636 -10.05794 -9.93186 -9.56732 -9.11404 -8.90029 -8.43356 -7.24192 -6.03174 -4.07587 1.74810 2.52169 3.30157 3.36431 3.40125 3.52111 4.39063 4.50832 4.82474 5.10181 5.16372 5.29658 5.45066 5.68658 5.78161 5.90791 5.99219 6.12107 6.16280 6.25319 6.44460 6.47239 6.79791 6.81310 7.00386 7.09916 7.47238 7.66007 7.80857 8.14530 8.28205 8.54484 8.58530 8.98438 9.57418 11.03798 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044280 B = 0.006903 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.187271 B = 4054.944528 C = 4248.553897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.181 4.181 3 C -0.083 4.083 4 O 0.091 5.909 5 N -0.367 5.367 6 C 0.043 3.957 7 C 0.122 3.878 8 N -0.529 5.529 9 C 0.039 3.961 10 C 0.212 3.788 11 H 0.000 1.000 12 C -0.134 4.134 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.210 0.790 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.013 0.987 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.036 0.964 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.655 12.596 -4.800 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.185 4.185 3 C -0.165 4.165 4 O 0.026 5.974 5 N -0.073 5.073 6 C -0.117 4.117 7 C -0.006 4.006 8 N -0.255 5.255 9 C -0.110 4.110 10 C 0.107 3.893 11 H 0.018 0.982 12 C -0.192 4.192 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.227 0.773 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.488 12.169 -4.584 13.089 hybrid contribution -0.398 -0.682 0.538 0.955 sum 1.090 11.487 -4.046 12.228 Atomic orbital electron populations 1.20063 0.87499 1.02489 1.03048 1.21320 0.98730 0.91535 1.06957 1.25631 0.83584 1.00814 1.06439 1.84780 1.28994 1.15818 1.67764 1.73839 1.22753 0.91010 1.19701 1.23633 0.87946 0.99016 1.01104 1.20467 1.00846 0.85850 0.93481 1.62149 1.22246 1.30182 1.10921 1.22212 0.89649 0.98576 1.00570 1.19289 0.91457 0.81729 0.96839 0.98234 1.21876 0.99195 1.03098 0.95017 1.21134 1.40141 1.01283 0.91607 0.91832 1.24923 0.95399 0.96488 0.97387 1.69889 1.41730 1.10388 1.31280 0.86504 0.78496 0.77600 0.84854 1.20631 1.21301 1.19944 0.90466 0.91765 0.90852 0.77328 0.94369 0.88613 0.96859 0.93817 0.90549 0.89469 0.97319 0.94492 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.37 36.00 0.37 -0.52 16 2 C -0.18 -2.63 6.32 -104.42 -0.66 -3.29 16 3 C -0.08 -1.01 12.26 29.74 0.36 -0.64 16 4 O 0.09 1.37 11.20 17.18 0.19 1.57 16 5 N -0.37 -6.55 11.27 33.42 0.38 -6.17 16 6 C 0.04 0.75 5.95 -82.10 -0.49 0.26 16 7 C 0.12 2.38 5.29 -4.97 -0.03 2.35 16 8 N -0.53 -11.81 4.61 -237.72 -1.10 -12.91 16 9 C 0.04 0.84 9.07 60.06 0.54 1.38 16 10 C 0.21 5.39 2.06 -68.86 -0.14 5.24 16 11 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 12 C -0.13 -3.19 8.76 37.16 0.33 -2.86 16 13 C -0.50 -13.81 7.93 -34.44 -0.27 -14.08 16 14 H 0.06 1.75 6.40 -52.49 -0.34 1.42 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.92 7.65 -51.93 -0.40 0.53 16 24 H 0.21 1.49 8.06 -52.49 -0.42 1.06 16 25 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 26 H 0.10 1.76 5.34 -51.93 -0.28 1.49 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.89 6.56 -51.93 -0.34 0.55 16 29 H 0.08 1.72 6.24 -51.93 -0.32 1.40 16 30 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 31 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -29.90 272.22 -5.30 -35.20 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.40 Total: -2.77 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.08 Total: -10.62 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.09 Total: -43.80 kcal Atomic # 8 Polarization: 1.37 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.90 -5.30 -35.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878189333.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.411 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds