Wall clock time and date at job start Sun Mar 29 2020 21:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34485 * 126.16042 * 2 1 4 4 C 1.30260 * 108.69814 * 179.97438 * 3 2 1 5 5 O 1.33967 * 108.75886 * 359.97438 * 4 3 2 6 6 C 1.34330 * 126.17007 * 179.97438 * 2 1 3 7 7 C 1.50703 * 126.44063 * 359.97438 * 6 2 1 8 8 N 1.46907 * 109.46406 * 90.00594 * 7 6 2 9 9 C 1.46902 * 110.99342 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46665 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46998 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.46906 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00634 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99621 * 179.97438 * 12 11 10 15 15 N 1.31521 * 119.99802 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00300 * 0.02562 * 14 12 11 17 17 H 1.48509 * 109.47476 * 89.99643 * 16 14 12 18 18 H 1.48504 * 109.47565 * 209.99692 * 16 14 12 19 19 H 1.48504 * 109.47191 * 329.99854 * 16 14 12 20 20 H 1.09010 * 109.46874 * 90.03209 * 1 2 3 21 21 H 1.09001 * 109.47525 * 210.02227 * 1 2 3 22 22 H 1.08999 * 109.47609 * 330.02940 * 1 2 3 23 23 H 1.07997 * 125.61808 * 179.97438 * 4 3 2 24 24 H 1.08993 * 109.46842 * 210.00401 * 7 6 2 25 25 H 1.08999 * 109.47191 * 330.00622 * 7 6 2 26 26 H 1.00892 * 111.00188 * 56.04702 * 8 7 6 27 27 H 1.08997 * 109.47026 * 299.99598 * 9 8 7 28 28 H 1.08998 * 109.47655 * 59.99931 * 9 8 7 29 29 H 1.08997 * 109.47062 * 299.99566 * 10 9 8 30 30 H 1.08992 * 109.47418 * 59.99951 * 10 9 8 31 31 H 1.08997 * 109.46846 * 299.99682 * 11 10 9 32 32 H 1.08992 * 109.47089 * 59.99733 * 11 10 9 33 33 H 0.97003 * 119.99502 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0858 0.0000 4 6 3.5431 0.6949 0.0006 5 8 3.5734 -0.6444 0.0015 6 6 2.2998 -1.0844 0.0005 7 6 1.8494 -2.5226 0.0017 8 7 1.7027 -2.9907 -1.3831 9 6 1.2632 -4.3920 -1.4211 10 6 1.1226 -4.8429 -2.8764 11 6 0.6643 -6.3022 -2.9161 12 6 0.5252 -6.7461 -4.3495 13 1 0.7416 -6.0565 -5.1519 14 6 0.1217 -8.0329 -4.6365 15 7 -0.0002 -8.4202 -5.8874 16 14 -0.2533 -9.2256 -3.2487 17 1 -1.6886 -9.1226 -2.8816 18 1 0.0459 -10.6110 -3.6921 19 1 0.5845 -8.8917 -2.0690 20 1 -0.3633 -0.0006 -1.0278 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.4065 1.3436 0.0003 24 1 2.5902 -3.1348 0.5157 25 1 0.8916 -2.6029 0.5158 26 1 2.5604 -2.8663 -1.8996 27 1 1.9997 -5.0175 -0.9168 28 1 0.3013 -4.4850 -0.9170 29 1 0.3864 -4.2174 -3.3811 30 1 2.0847 -4.7501 -3.3801 31 1 1.4002 -6.9280 -2.4113 32 1 -0.2979 -6.3946 -2.4125 33 1 -0.2844 -9.3254 -6.0893 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894236551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:30 Heat of formation + Delta-G solvation = -18.637898 kcal Electronic energy + Delta-G solvation = -14591.653362 eV Core-core repulsion = 12038.473002 eV Total energy + Delta-G solvation = -2553.180361 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.29137 -37.98083 -36.14046 -35.57816 -33.86520 -32.27627 -29.64445 -27.94076 -25.85733 -23.72020 -23.03765 -22.06643 -21.53364 -18.92117 -18.06078 -17.69035 -17.01446 -16.38724 -16.06059 -15.67604 -15.43067 -14.74659 -14.60078 -14.14425 -13.91142 -13.74806 -13.44735 -13.23332 -12.92013 -12.59459 -12.52179 -11.99124 -11.78853 -11.66461 -11.47861 -11.45104 -11.27136 -10.74936 -9.74664 -9.41667 -8.28097 -6.32787 0.46352 1.38055 1.40189 1.52159 1.69102 1.83672 2.38142 3.07421 3.25461 3.34841 3.75238 3.93459 4.15386 4.22722 4.36168 4.42950 4.68522 4.71598 4.81613 4.86965 4.90114 4.97376 5.01392 5.12348 5.18064 5.46346 5.51842 5.62319 5.67694 5.94936 6.26161 6.31925 6.74811 6.76100 7.31947 8.89109 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.057225 B = 0.004198 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.182034 B = 6667.450092 C = 6696.056451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.011 4.011 3 N -0.525 5.525 4 C 0.183 3.817 5 O -0.216 6.216 6 C -0.060 4.060 7 C 0.149 3.851 8 N -0.692 5.692 9 C 0.071 3.929 10 C -0.092 4.092 11 C -0.010 4.010 12 C -0.535 4.535 13 H 0.027 0.973 14 C -0.001 4.001 15 N -0.955 5.955 16 Si 0.957 3.043 17 H -0.265 1.265 18 H -0.286 1.286 19 H -0.242 1.242 20 H 0.073 0.927 21 H 0.089 0.911 22 H 0.076 0.924 23 H 0.293 0.707 24 H 0.057 0.943 25 H 0.119 0.881 26 H 0.342 0.658 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 14.874 17.302 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.130 4.130 3 N -0.254 5.254 4 C -0.044 4.044 5 O -0.102 6.102 6 C -0.113 4.113 7 C 0.021 3.979 8 N -0.324 5.324 9 C -0.058 4.058 10 C -0.131 4.131 11 C -0.048 4.048 12 C -0.574 4.574 13 H 0.045 0.955 14 C -0.197 4.197 15 N -0.596 5.596 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.212 1.212 19 H -0.166 1.166 20 H 0.092 0.908 21 H 0.107 0.893 22 H 0.095 0.905 23 H 0.308 0.692 24 H 0.075 0.925 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.459 15.578 17.142 23.588 hybrid contribution 0.996 -1.570 -0.107 1.862 sum 5.455 14.008 17.035 22.720 Atomic orbital electron populations 1.20168 0.85357 1.03811 1.03247 1.21886 0.99046 0.87541 1.04561 1.70381 1.02674 1.32477 1.19887 1.29049 0.98221 0.79092 0.97989 1.84426 1.30301 1.25545 1.69966 1.23238 0.80734 0.98224 1.09128 1.20326 1.01870 0.84853 0.90876 1.60517 1.38196 1.21155 1.12495 1.21937 1.00763 0.86406 0.96649 1.21273 1.00232 0.95982 0.95568 1.19492 0.96566 0.94292 0.94453 1.21545 1.45188 0.97530 0.93088 0.95498 1.26114 0.94689 1.00494 0.98390 1.70093 1.49491 1.19422 1.20580 0.85567 0.79678 0.77121 0.79702 1.18993 1.21180 1.16577 0.90797 0.89266 0.90544 0.69197 0.92484 0.86294 0.84020 0.94308 0.89881 0.93266 0.93795 0.95982 0.95842 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.22 71.23 0.73 -0.60 16 2 C -0.01 -0.26 7.11 41.26 0.29 0.04 16 3 N -0.52 -12.52 11.30 -304.07 -3.43 -15.95 16 4 C 0.18 3.21 13.23 130.48 1.73 4.94 16 5 O -0.22 -4.66 10.77 -3.68 -0.04 -4.70 16 6 C -0.06 -1.38 6.90 24.79 0.17 -1.21 16 7 C 0.15 3.05 6.02 85.56 0.52 3.57 16 8 N -0.69 -17.52 6.49 -517.91 -3.36 -20.88 16 9 C 0.07 1.99 5.69 86.30 0.49 2.48 16 10 C -0.09 -3.52 5.41 30.60 0.17 -3.36 16 11 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 12 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 13 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 14 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 15 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 16 Si 0.96 43.94 27.47 68.60 1.88 45.82 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 20 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.09 1.41 7.17 -2.39 -0.02 1.39 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.29 1.68 8.06 -2.91 -0.02 1.66 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.12 2.05 7.17 -2.39 -0.02 2.03 16 26 H 0.34 8.81 8.72 -89.70 -0.78 8.03 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 32 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -71.98 283.66 0.53 -71.45 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.26 Total: 9.77 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.92 Total: -25.10 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -6.50 Total: -97.25 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.04 Total: -4.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -71.98 0.53 -71.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894236551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.816 kcal (2) G-P(sol) polarization free energy of solvation -71.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds