Wall clock time and date at job start Sun Mar 29 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47186 * 2 1 4 4 N 1.46903 * 109.46878 * 239.99629 * 2 1 3 5 5 C 1.46910 * 110.99616 * 85.00231 * 4 2 1 6 6 C 1.53001 * 109.46861 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.46982 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99665 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00095 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99907 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99999 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46976 * 60.00416 * 11 9 7 13 13 H 1.48504 * 109.46983 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47373 * 300.00325 * 11 9 7 15 15 C 1.50700 * 109.47508 * 119.99943 * 2 1 3 16 16 C 1.35357 * 126.91424 * 124.67737 * 15 2 1 17 17 N 1.33771 * 106.49776 * 180.26556 * 16 15 2 18 18 N 1.28636 * 108.88559 * 0.02562 * 17 16 15 19 19 N 1.28714 * 110.17874 * 359.97438 * 18 17 16 20 20 C 1.46498 * 125.86955 * 179.97438 * 19 18 17 21 21 H 1.09008 * 109.47189 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47037 * 299.99790 * 1 2 3 23 23 H 1.08998 * 109.47566 * 60.00080 * 1 2 3 24 24 H 1.00897 * 111.00126 * 208.94767 * 4 2 1 25 25 H 1.08995 * 109.46948 * 299.99638 * 5 4 2 26 26 H 1.08998 * 109.46987 * 59.99710 * 5 4 2 27 27 H 1.08995 * 109.47121 * 299.99626 * 6 5 4 28 28 H 1.09005 * 109.46864 * 59.99967 * 6 5 4 29 29 H 0.97000 * 119.99327 * 179.97438 * 10 9 7 30 30 H 1.08004 * 126.74923 * 0.27195 * 16 15 2 31 31 H 1.09003 * 109.47467 * 270.02555 * 20 19 18 32 32 H 1.09003 * 109.46956 * 30.02323 * 20 19 18 33 33 H 1.09001 * 109.47448 * 150.02620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0823 0.2226 -2.3469 6 6 2.5961 -0.5330 -3.5742 7 6 2.6599 0.4056 -4.7515 8 1 2.3633 1.4377 -4.6360 9 6 3.0969 -0.0532 -5.9761 10 7 3.4576 -1.3101 -6.1168 11 14 3.1754 1.1101 -7.4355 12 1 4.0953 2.2335 -7.1242 13 1 3.6741 0.3768 -8.6267 14 1 1.8186 1.6446 -7.7160 15 6 2.0324 -0.7104 1.2304 16 6 2.8839 -1.7617 1.2715 17 7 3.0470 -2.0683 2.5633 18 7 2.3427 -1.2608 3.2750 19 7 1.7180 -0.4296 2.5163 20 6 0.8203 0.6367 2.9672 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 2.9172 -1.1205 -1.0288 25 1 1.0870 0.6162 -2.5525 26 1 2.7587 1.0461 -2.1182 27 1 3.5915 -0.9263 -3.3683 28 1 1.9199 -1.3568 -3.8030 29 1 3.7648 -1.6328 -6.9784 30 1 3.3418 -2.2558 0.4272 31 1 -0.1985 0.2535 3.0255 32 1 1.1346 0.9843 3.9513 33 1 0.8567 1.4656 2.2603 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926131124.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:51 Heat of formation + Delta-G solvation = 68.172111 kcal Electronic energy + Delta-G solvation = -15066.353627 eV Core-core repulsion = 12549.230382 eV Total energy + Delta-G solvation = -2517.123245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.33394 -38.37434 -35.85537 -35.25359 -33.23848 -30.88765 -29.74167 -28.86131 -26.25000 -24.30566 -23.40321 -22.12715 -21.37383 -18.48266 -18.39073 -17.69677 -16.92715 -16.46611 -15.97938 -15.48765 -15.04695 -14.50462 -14.22088 -14.12413 -13.90328 -13.76444 -13.19877 -12.95043 -12.83230 -12.68834 -12.47421 -12.33100 -11.96684 -11.70202 -11.37893 -11.25378 -11.05714 -10.52888 -10.22795 -9.36380 -8.17004 -6.28133 0.52571 1.42649 1.44187 1.46068 1.48792 1.53958 2.43115 3.10668 3.17188 3.29772 3.63859 3.92185 4.07903 4.19194 4.29750 4.45544 4.52878 4.57594 4.62121 4.72354 4.85928 4.93647 5.09788 5.13060 5.33555 5.48679 5.58655 5.70995 5.81458 6.12444 6.25275 6.43673 6.89741 7.41291 7.42259 8.94853 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.054703 B = 0.004983 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.728209 B = 5618.049934 C = 5944.860513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.162 3.838 3 H 0.073 0.927 4 N -0.687 5.687 5 C 0.086 3.914 6 C 0.029 3.971 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.266 1.266 15 C -0.007 4.007 16 C -0.059 4.059 17 N -0.304 5.304 18 N -0.112 5.112 19 N -0.277 5.277 20 C 0.061 3.939 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.342 0.658 25 H 0.069 0.931 26 H 0.025 0.975 27 H -0.009 1.009 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.196 0.804 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 7.161 15.279 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.051 3.949 3 H 0.091 0.909 4 N -0.320 5.320 5 C -0.042 4.042 6 C -0.008 4.008 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.140 4.140 16 C -0.217 4.217 17 N -0.168 5.168 18 N -0.091 5.091 19 N -0.072 5.072 20 C -0.078 4.078 21 H 0.071 0.929 22 H 0.106 0.894 23 H 0.086 0.914 24 H 0.161 0.839 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.009 0.991 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.212 0.788 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.307 6.369 16.507 19.143 hybrid contribution 0.870 0.866 -1.800 2.179 sum -6.437 7.235 14.707 17.609 Atomic orbital electron populations 1.21931 0.91842 1.02736 1.03351 1.19955 0.97104 0.94786 0.83103 0.90942 1.60683 1.34137 1.33617 1.03576 1.21861 0.99938 0.93011 0.89440 1.18931 0.94512 0.95186 0.92197 1.21593 1.43861 0.97118 0.95560 0.91806 1.25950 0.94889 0.96713 1.02145 1.70106 1.45249 1.16449 1.25426 0.85513 0.78949 0.78683 0.77959 1.19173 1.21185 1.19060 1.22352 1.02474 1.01281 0.87938 1.23590 1.03094 0.99306 0.95748 1.75011 1.18121 1.20070 1.03638 1.78162 1.09058 1.01562 1.20367 1.47431 1.31621 1.24170 1.03993 1.22879 0.93078 0.87195 1.04604 0.92899 0.89447 0.91373 0.83860 0.91231 0.95662 0.99073 0.98575 0.92855 0.78757 0.86827 0.86460 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.24 71.98 0.67 -2.13 16 2 C 0.16 3.87 2.71 44.17 0.12 3.99 16 3 H 0.07 1.57 7.80 -2.39 -0.02 1.55 16 4 N -0.69 -21.87 6.20 -495.44 -3.07 -24.94 16 5 C 0.09 3.26 5.42 86.30 0.47 3.72 16 6 C 0.03 1.49 5.23 29.85 0.16 1.64 16 7 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 9 C 0.00 0.06 5.46 84.65 0.46 0.52 16 10 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 11 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 C -0.01 -0.17 6.29 41.36 0.26 0.09 16 16 C -0.06 -1.75 11.06 83.73 0.93 -0.82 16 17 N -0.30 -9.94 12.41 -58.25 -0.72 -10.66 16 18 N -0.11 -3.27 13.17 37.02 0.49 -2.78 16 19 N -0.28 -6.15 3.74 -355.71 -1.33 -7.48 16 20 C 0.06 0.61 9.69 127.77 1.24 1.85 16 21 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.09 1.07 5.58 -2.38 -0.01 1.06 16 23 H 0.07 1.43 7.45 -2.39 -0.02 1.41 16 24 H 0.34 10.91 6.57 -89.70 -0.59 10.32 16 25 H 0.07 2.54 7.44 -2.39 -0.02 2.52 16 26 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 29 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.20 5.35 6.90 -2.91 -0.02 5.33 16 31 H 0.11 0.72 7.84 -2.39 -0.02 0.70 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.12 0.70 7.27 -2.39 -0.02 0.68 16 Total: -1.00 -70.16 277.40 2.72 -67.44 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.52 Total: 9.82 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 4.53 Total: -20.71 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -4.35 Total: -101.77 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -70.16 2.72 -67.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926131124.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.612 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds