Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47186 * 2 1 4 4 N 1.30253 * 125.62135 * 89.97284 * 3 2 1 5 5 C 1.34479 * 108.70108 * 179.77591 * 4 3 2 6 6 C 1.34325 * 107.67015 * 0.39596 * 5 4 3 7 7 C 1.50699 * 126.44607 * 179.87619 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.70617 * 7 6 5 9 9 C 1.36936 * 120.00342 * 270.00153 * 8 7 6 10 10 H 1.07994 * 119.99707 * 142.21761 * 9 8 7 11 11 C 1.38816 * 120.00051 * 322.21259 * 9 8 7 12 12 N 1.31615 * 119.99498 * 158.30545 * 11 9 8 13 13 Si 1.86798 * 119.99931 * 338.30670 * 11 9 8 14 14 H 1.48506 * 109.46913 * 95.30654 * 13 11 9 15 15 H 1.48492 * 109.47178 * 215.30567 * 13 11 9 16 16 H 1.48501 * 109.47238 * 335.31023 * 13 11 9 17 17 C 1.46500 * 119.99482 * 90.00388 * 8 7 6 18 18 C 1.52992 * 109.47238 * 264.87780 * 17 8 7 19 19 O 1.33971 * 125.61996 * 269.99776 * 3 2 1 20 20 H 1.09002 * 109.47564 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47437 * 300.00304 * 1 2 3 22 22 H 1.09011 * 109.46934 * 60.00306 * 1 2 3 23 23 H 1.09002 * 109.46921 * 239.99649 * 2 1 3 24 24 H 1.09003 * 109.46871 * 120.00325 * 2 1 3 25 25 H 1.08000 * 126.16016 * 180.26796 * 5 4 3 26 26 H 1.09002 * 109.46781 * 329.71272 * 7 6 5 27 27 H 1.08996 * 109.47456 * 209.71165 * 7 6 5 28 28 H 0.97004 * 119.99450 * 180.02562 * 12 11 9 29 29 H 1.09004 * 109.47166 * 24.87980 * 17 8 7 30 30 H 1.08999 * 109.47029 * 144.87749 * 17 8 7 31 31 H 1.08997 * 109.47432 * 305.34585 * 18 17 8 32 32 H 1.08997 * 109.47556 * 65.34574 * 18 17 8 33 33 H 1.09006 * 109.47598 * 185.34485 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2847 2.1362 1.0588 5 6 2.7185 3.3474 0.6674 6 6 2.7196 3.3657 -0.6757 7 6 3.1278 4.5195 -1.5550 8 7 4.5624 4.4329 -1.8394 9 6 5.4632 5.0448 -1.0093 10 1 6.4071 4.5675 -0.7912 11 6 5.1632 6.2785 -0.4482 12 7 5.7835 6.6732 0.6435 13 14 3.8792 7.3784 -1.2426 14 1 2.5665 7.1635 -0.5823 15 1 4.2827 8.7994 -1.0912 16 1 3.7675 7.0465 -2.6857 17 6 5.0330 3.6915 -3.0121 18 6 5.4030 2.2656 -2.5993 19 8 2.2925 2.1564 -1.0890 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0111 4.1598 1.3162 26 1 2.9148 5.4586 -1.0443 27 1 2.5689 4.4794 -2.4899 28 1 5.5735 7.5352 1.0357 29 1 4.2432 3.6592 -3.7626 30 1 5.9094 4.1883 -3.4283 31 1 6.1239 2.2992 -1.7824 32 1 4.5072 1.7380 -2.2718 33 1 5.8417 1.7433 -3.4496 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929465148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = 36.883040 kcal Electronic energy + Delta-G solvation = -15836.780436 eV Core-core repulsion = 13286.007644 eV Total energy + Delta-G solvation = -2550.772792 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.59437 -36.44440 -34.27448 -33.55798 -32.04282 -30.78254 -28.58874 -25.84951 -24.05152 -23.21596 -21.56908 -20.54326 -20.18685 -17.18584 -16.21738 -15.99312 -15.50213 -14.49132 -14.40600 -14.19424 -13.43710 -13.33902 -12.72414 -12.60792 -12.43371 -12.34509 -11.95703 -11.70313 -11.37904 -11.12929 -10.88195 -10.75638 -10.57782 -10.24898 -10.13121 -9.89801 -9.70621 -8.65857 -7.98384 -7.04102 -6.12098 -3.56488 2.13423 3.18677 3.24406 3.35839 3.40323 3.43864 4.38247 4.51625 4.92141 5.06248 5.19859 5.21458 5.38675 5.61571 5.73083 5.77704 5.86280 5.88929 6.08678 6.13320 6.13840 6.19422 6.31805 6.44295 6.53390 6.71553 6.75278 7.00013 7.08785 7.89587 8.27165 8.41253 8.81566 9.55074 9.93661 11.02515 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.009333 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.935168 B = 2999.517933 C = 3347.656008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 C 0.152 3.848 4 N -0.481 5.481 5 C -0.042 4.042 6 C -0.033 4.033 7 C 0.210 3.790 8 N -0.590 5.590 9 C -0.274 4.274 10 H 0.081 0.919 11 C 0.041 3.959 12 N -0.889 5.889 13 Si 0.868 3.132 14 H -0.282 1.282 15 H -0.295 1.295 16 H -0.265 1.265 17 C 0.143 3.857 18 C -0.167 4.167 19 O -0.206 6.206 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.098 0.902 25 H 0.179 0.821 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.266 0.734 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.500 -9.392 -4.729 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.055 4.055 4 N -0.211 5.211 5 C -0.181 4.181 6 C -0.089 4.089 7 C 0.082 3.918 8 N -0.310 5.310 9 C -0.402 4.402 10 H 0.098 0.902 11 C -0.161 4.161 12 N -0.528 5.528 13 Si 0.697 3.303 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.189 1.189 17 C 0.018 3.982 18 C -0.226 4.226 19 O -0.093 6.093 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.116 0.884 25 H 0.196 0.804 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.487 -9.456 -4.074 13.344 hybrid contribution -0.427 0.950 -0.732 1.273 sum -8.914 -8.506 -4.806 13.226 Atomic orbital electron populations 1.21766 0.93799 1.02209 1.02799 1.19854 0.96269 0.85211 1.04339 1.25982 1.02932 0.96938 0.79694 1.70307 1.16029 1.04253 1.30519 1.22982 1.05551 0.95926 0.93665 1.25481 1.00215 0.86237 0.97006 1.20080 0.86372 0.90096 0.95262 1.44274 1.00467 1.59865 1.26423 1.18752 1.00070 0.99023 1.22369 0.90155 1.25477 0.97492 0.96833 0.96315 1.69872 1.43801 1.21481 1.17692 0.87048 0.81149 0.80672 0.81393 1.20954 1.22268 1.18940 1.20940 0.97966 0.91191 0.88116 1.22255 1.01033 0.98809 1.00539 1.84375 1.64143 1.23184 1.37553 0.91493 0.91932 0.92358 0.89623 0.88396 0.80414 0.89532 0.92177 0.92383 0.94164 0.92365 0.92718 0.93783 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.02 -0.23 6.56 -27.89 -0.18 -0.41 16 3 C 0.15 2.75 7.60 -12.95 -0.10 2.65 16 4 N -0.48 -10.03 11.29 -11.10 -0.13 -10.15 16 5 C -0.04 -0.94 11.80 -17.77 -0.21 -1.15 16 6 C -0.03 -0.72 6.96 -35.69 -0.25 -0.97 16 7 C 0.21 4.57 5.09 -5.19 -0.03 4.55 16 8 N -0.59 -13.82 2.07 -174.61 -0.36 -14.18 16 9 C -0.27 -7.44 9.92 -15.06 -0.15 -7.59 16 10 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 11 C 0.04 1.12 5.31 -17.43 -0.09 1.03 16 12 N -0.89 -26.19 13.97 55.49 0.78 -25.42 16 13 Si 0.87 20.91 25.01 -169.99 -4.25 16.66 16 14 H -0.28 -6.54 6.68 56.52 0.38 -6.16 16 15 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.14 2.84 6.44 -4.05 -0.03 2.82 16 18 C -0.17 -3.10 10.21 37.15 0.38 -2.72 16 19 O -0.21 -4.08 10.05 5.35 0.05 -4.03 16 20 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.18 4.05 8.06 -52.49 -0.42 3.62 16 26 H 0.09 1.99 3.24 -51.93 -0.17 1.82 16 27 H 0.06 1.16 7.86 -51.93 -0.41 0.75 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.84 7.39 -51.93 -0.38 0.46 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -30.50 278.88 -4.74 -35.25 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -4.75 Total: 0.63 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -0.29 Total: -2.96 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.29 Total: -49.75 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.05 Total: -4.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.25 Total: 16.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.50 -4.74 -35.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.132 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds