Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47186 * 2 1 4 4 N 1.30253 * 125.62135 * 89.97284 * 3 2 1 5 5 C 1.34479 * 108.70108 * 179.77591 * 4 3 2 6 6 C 1.34325 * 107.67015 * 0.39596 * 5 4 3 7 7 C 1.50699 * 126.44607 * 179.87619 * 6 5 4 8 8 N 1.46501 * 109.46949 * 89.70617 * 7 6 5 9 9 C 1.36936 * 120.00342 * 270.00153 * 8 7 6 10 10 H 1.07994 * 119.99707 * 142.21761 * 9 8 7 11 11 C 1.38816 * 120.00051 * 322.21259 * 9 8 7 12 12 N 1.31615 * 119.99498 * 158.30545 * 11 9 8 13 13 Si 1.86798 * 119.99931 * 338.30670 * 11 9 8 14 14 H 1.48506 * 109.46913 * 95.30654 * 13 11 9 15 15 H 1.48492 * 109.47178 * 215.30567 * 13 11 9 16 16 H 1.48501 * 109.47238 * 335.31023 * 13 11 9 17 17 C 1.46500 * 119.99482 * 90.00388 * 8 7 6 18 18 C 1.52992 * 109.47238 * 264.87780 * 17 8 7 19 19 O 1.33971 * 125.61996 * 269.99776 * 3 2 1 20 20 H 1.09002 * 109.47564 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47437 * 300.00304 * 1 2 3 22 22 H 1.09011 * 109.46934 * 60.00306 * 1 2 3 23 23 H 1.09002 * 109.46921 * 239.99649 * 2 1 3 24 24 H 1.09003 * 109.46871 * 120.00325 * 2 1 3 25 25 H 1.08000 * 126.16016 * 180.26796 * 5 4 3 26 26 H 1.09002 * 109.46781 * 329.71272 * 7 6 5 27 27 H 1.08996 * 109.47456 * 209.71165 * 7 6 5 28 28 H 0.97004 * 119.99450 * 180.02562 * 12 11 9 29 29 H 1.09004 * 109.47166 * 24.87980 * 17 8 7 30 30 H 1.08999 * 109.47029 * 144.87749 * 17 8 7 31 31 H 1.08997 * 109.47432 * 305.34585 * 18 17 8 32 32 H 1.08997 * 109.47556 * 65.34574 * 18 17 8 33 33 H 1.09006 * 109.47598 * 185.34485 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2847 2.1362 1.0588 5 6 2.7185 3.3474 0.6674 6 6 2.7196 3.3657 -0.6757 7 6 3.1278 4.5195 -1.5550 8 7 4.5624 4.4329 -1.8394 9 6 5.4632 5.0448 -1.0093 10 1 6.4071 4.5675 -0.7912 11 6 5.1632 6.2785 -0.4482 12 7 5.7835 6.6732 0.6435 13 14 3.8792 7.3784 -1.2426 14 1 2.5665 7.1635 -0.5823 15 1 4.2827 8.7994 -1.0912 16 1 3.7675 7.0465 -2.6857 17 6 5.0330 3.6915 -3.0121 18 6 5.4030 2.2656 -2.5993 19 8 2.2925 2.1564 -1.0890 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.0111 4.1598 1.3162 26 1 2.9148 5.4586 -1.0443 27 1 2.5689 4.4794 -2.4899 28 1 5.5735 7.5352 1.0357 29 1 4.2432 3.6592 -3.7626 30 1 5.9094 4.1883 -3.4283 31 1 6.1239 2.2992 -1.7824 32 1 4.5072 1.7380 -2.2718 33 1 5.8417 1.7433 -3.4496 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929465148.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = 15.494197 kcal Electronic energy + Delta-G solvation = -15837.707926 eV Core-core repulsion = 13286.007644 eV Total energy + Delta-G solvation = -2551.700282 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.17978 -38.22358 -35.74055 -34.80421 -34.06798 -32.34864 -30.26730 -27.48310 -25.71463 -24.59364 -23.16635 -22.23400 -21.71197 -19.09237 -17.81430 -17.62277 -17.29855 -16.16961 -15.75940 -15.60351 -15.08091 -14.69165 -14.55517 -14.28825 -14.07813 -13.73609 -13.44828 -13.00719 -12.66756 -12.60015 -12.48460 -12.20285 -12.16036 -12.02464 -11.77034 -11.67851 -11.42521 -10.70908 -9.61879 -8.95128 -8.24820 -5.68729 0.56522 1.28687 1.41537 1.51158 1.72915 1.81096 2.37003 2.99239 3.16684 3.32765 3.92936 4.06833 4.16382 4.28878 4.32190 4.39973 4.47019 4.54073 4.66243 4.76702 4.91236 4.96247 4.98305 5.05375 5.11451 5.16384 5.29873 5.45020 5.50785 5.86677 6.13987 6.81488 6.86368 7.50418 7.92005 8.93988 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.031562 B = 0.009333 C = 0.008362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.935168 B = 2999.517933 C = 3347.656008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C 0.172 3.828 4 N -0.511 5.511 5 C -0.064 4.064 6 C -0.041 4.041 7 C 0.208 3.792 8 N -0.600 5.600 9 C -0.266 4.266 10 H 0.036 0.964 11 C -0.012 4.012 12 N -0.940 5.940 13 Si 0.934 3.066 14 H -0.269 1.269 15 H -0.302 1.302 16 H -0.245 1.245 17 C 0.136 3.864 18 C -0.155 4.155 19 O -0.204 6.204 20 H 0.101 0.899 21 H 0.048 0.952 22 H 0.055 0.945 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.266 0.734 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.038 0.962 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.593 -11.039 -6.836 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.036 4.036 4 N -0.241 5.241 5 C -0.202 4.202 6 C -0.097 4.097 7 C 0.081 3.919 8 N -0.322 5.322 9 C -0.396 4.396 10 H 0.054 0.946 11 C -0.209 4.209 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.196 1.196 15 H -0.230 1.230 16 H -0.168 1.168 17 C 0.012 3.988 18 C -0.214 4.214 19 O -0.091 6.091 20 H 0.120 0.880 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.177 0.823 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.596 -11.124 -6.200 16.567 hybrid contribution 0.223 1.261 -0.040 1.281 sum -10.373 -9.864 -6.240 15.615 Atomic orbital electron populations 1.21753 0.91880 1.04304 1.02056 1.20305 0.97714 0.81594 1.06304 1.27293 0.99572 0.98178 0.78512 1.70309 1.17815 1.04136 1.31823 1.22894 1.06621 0.96501 0.94206 1.25204 1.01044 0.87069 0.96419 1.20076 0.85599 0.89592 0.96627 1.44357 1.00622 1.60183 1.27026 1.18511 0.99466 0.99068 1.22505 0.94616 1.26093 1.00265 0.98144 0.96431 1.70006 1.46707 1.22013 1.19498 0.85987 0.78880 0.77756 0.81300 1.19632 1.23049 1.16836 1.21158 0.99031 0.91109 0.87546 1.22122 1.00052 0.98501 1.00748 1.84375 1.64211 1.22572 1.37923 0.87996 0.93253 0.92543 0.86964 0.87077 0.82278 0.90936 0.88713 0.92488 0.90840 0.92561 0.95940 0.94264 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.02 -0.45 6.56 29.85 0.20 -0.26 16 3 C 0.17 5.91 7.60 88.34 0.67 6.59 16 4 N -0.51 -21.14 11.29 -303.83 -3.43 -24.58 16 5 C -0.06 -2.90 11.80 83.39 0.98 -1.91 16 6 C -0.04 -1.74 6.96 24.79 0.17 -1.57 16 7 C 0.21 8.72 5.09 85.63 0.44 9.15 16 8 N -0.60 -27.66 2.07 -706.36 -1.46 -29.12 16 9 C -0.27 -14.85 9.92 84.03 0.83 -14.01 16 10 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 11 C -0.01 -0.66 5.31 84.86 0.45 -0.21 16 12 N -0.94 -57.65 13.97 21.65 0.30 -57.34 16 13 Si 0.93 43.36 25.01 68.60 1.72 45.07 16 14 H -0.27 -11.86 6.68 99.48 0.66 -11.20 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 17 C 0.14 5.10 6.44 86.38 0.56 5.66 16 18 C -0.16 -5.49 10.21 71.98 0.73 -4.76 16 19 O -0.20 -7.63 10.05 -3.76 -0.04 -7.66 16 20 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 23 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.16 7.65 8.06 -2.91 -0.02 7.63 16 26 H 0.07 3.24 3.24 -2.39 -0.01 3.23 16 27 H 0.09 3.30 7.86 -2.39 -0.02 3.28 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.07 2.30 7.83 -2.39 -0.02 2.29 16 30 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 1.40 7.39 -2.39 -0.02 1.39 16 33 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -68.31 278.88 3.88 -64.43 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.04 Total: 12.25 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.75 Total: -3.05 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.59 Total: -111.04 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.04 Total: -7.66 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.72 Total: 45.07 kcal Total: -68.31 3.88 -64.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929465148.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.926 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds