Wall clock time and date at job start Sun Mar 29 2020 21:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47385 * 2 1 4 4 O 1.21282 * 119.99550 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00010 * 179.97438 * 3 2 1 6 6 C 1.46498 * 119.99598 * 179.97438 * 5 3 2 7 7 H 1.08998 * 115.49738 * 9.62846 * 6 5 3 8 8 C 1.57267 * 116.90283 * 223.09203 * 6 5 3 9 9 H 1.09000 * 120.67598 * 3.43806 * 8 6 5 10 10 C 1.54386 * 118.11081 * 161.54796 * 8 6 5 11 11 N 1.48146 * 104.71862 * 86.05945 * 10 8 6 12 12 C 1.36934 * 127.83756 * 140.35768 * 11 10 8 13 13 H 1.07999 * 119.99882 * 195.61312 * 12 11 10 14 14 C 1.38816 * 120.00098 * 15.61148 * 12 11 10 15 15 N 1.31612 * 120.00108 * 9.10877 * 14 12 11 16 16 Si 1.86803 * 119.99782 * 189.10834 * 14 12 11 17 17 H 1.48498 * 109.47395 * 59.99868 * 16 14 12 18 18 H 1.48499 * 109.46650 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47145 * 299.99680 * 16 14 12 20 20 C 1.48143 * 104.32403 * 320.35279 * 11 10 8 21 21 C 1.53002 * 117.43863 * 154.99894 * 6 5 3 22 22 H 1.09006 * 119.54462 * 354.28980 * 21 6 5 23 23 H 1.08999 * 109.47022 * 60.00176 * 1 2 3 24 24 H 1.09003 * 109.47251 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47310 * 300.00111 * 1 2 3 26 26 H 1.08994 * 109.47324 * 239.99556 * 2 1 3 27 27 H 1.09005 * 109.47370 * 120.00041 * 2 1 3 28 28 H 0.96999 * 119.99987 * 0.02562 * 5 3 2 29 29 H 1.08993 * 110.40909 * 327.21121 * 10 8 6 30 30 H 1.09006 * 110.40453 * 204.89825 * 10 8 6 31 31 H 0.96998 * 120.00174 * 179.97438 * 15 14 12 32 32 H 1.08994 * 110.40818 * 158.37311 * 20 11 10 33 33 H 1.08999 * 110.40690 * 280.80712 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 0.0005 6 6 3.8457 3.0482 0.0000 7 1 3.0875 3.8140 0.1637 8 6 5.0490 3.3772 -0.9578 9 1 5.4518 2.6163 -1.6262 10 6 5.3094 4.8559 -1.3171 11 7 6.1628 5.3656 -0.2186 12 6 7.2296 6.2191 -0.3105 13 1 7.9168 6.3155 0.5171 14 6 7.4278 6.9604 -1.4673 15 7 6.5013 6.9821 -2.4018 16 14 9.0095 7.9271 -1.6975 17 1 10.1672 6.9976 -1.6643 18 1 8.9747 8.6288 -3.0058 19 1 9.1438 8.9241 -0.6051 20 6 5.5999 4.7425 1.0019 21 6 5.2407 3.3031 0.5744 22 1 5.7855 2.4851 1.0461 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.9877 0.9297 0.0005 29 1 4.3708 5.4084 -1.3569 30 1 5.8332 4.9288 -2.2703 31 1 6.6396 7.5004 -3.2099 32 1 6.3435 4.7279 1.7987 33 1 4.7065 5.2773 1.3243 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957967983.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:56 Heat of formation + Delta-G solvation = -6.526976 kcal Electronic energy + Delta-G solvation = -15134.655987 eV Core-core repulsion = 12582.000796 eV Total energy + Delta-G solvation = -2552.655192 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00224 -39.72162 -36.04187 -34.38029 -33.54663 -31.92176 -28.94561 -27.71108 -25.54673 -23.28007 -21.95174 -21.21641 -20.81073 -18.87706 -18.08260 -17.56510 -16.74547 -16.50970 -15.67638 -15.31694 -14.83741 -14.64808 -14.34103 -13.80504 -13.43601 -13.16849 -13.12182 -12.84792 -12.67154 -12.61289 -12.16024 -12.06515 -11.98821 -11.87346 -11.65573 -10.98821 -10.80539 -10.70593 -9.62215 -8.94435 -7.92680 -5.30502 1.46467 1.50018 1.56907 1.58010 2.04352 2.48440 2.79414 3.27860 3.53867 3.78095 3.81223 3.93853 4.12237 4.24384 4.32107 4.37399 4.52135 4.70371 4.85238 4.94075 4.97275 5.03461 5.10201 5.26801 5.37257 5.41823 5.45417 5.56607 5.62601 6.14854 6.58070 6.98253 7.29305 7.65743 8.44359 9.21104 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.076775 B = 0.005177 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.612690 B = 5407.756601 C = 5543.611716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.504 3.496 4 O -0.593 6.593 5 N -0.685 5.685 6 C 0.113 3.887 7 H 0.103 0.897 8 C -0.188 4.188 9 H 0.125 0.875 10 C 0.188 3.812 11 N -0.618 5.618 12 C -0.246 4.246 13 H 0.085 0.915 14 C -0.062 4.062 15 N -0.950 5.950 16 Si 0.984 3.016 17 H -0.273 1.273 18 H -0.294 1.294 19 H -0.275 1.275 20 C 0.146 3.854 21 C -0.155 4.155 22 H 0.140 0.860 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.044 0.956 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.420 0.580 29 H -0.009 1.009 30 H 0.057 0.943 31 H 0.250 0.750 32 H 0.067 0.933 33 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -17.008 5.241 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.293 3.707 4 O -0.473 6.473 5 N -0.335 5.335 6 C 0.005 3.995 7 H 0.121 0.879 8 C -0.210 4.210 9 H 0.143 0.857 10 C 0.062 3.938 11 N -0.342 5.342 12 C -0.374 4.374 13 H 0.102 0.898 14 C -0.256 4.256 15 N -0.597 5.597 16 Si 0.811 3.189 17 H -0.199 1.199 18 H -0.220 1.220 19 H -0.200 1.200 20 C 0.020 3.980 21 C -0.176 4.176 22 H 0.157 0.843 23 H 0.061 0.939 24 H 0.109 0.891 25 H 0.064 0.936 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.258 0.742 29 H 0.009 0.991 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.680 -16.193 5.116 17.906 hybrid contribution 0.921 0.837 -0.447 1.322 sum -4.759 -15.356 4.669 16.741 Atomic orbital electron populations 1.21558 0.93621 1.02763 1.01734 1.21702 0.98021 0.90291 1.07080 1.21804 0.81405 0.93470 0.73998 1.90699 1.56469 1.48718 1.51457 1.45275 1.07571 1.06656 1.73983 1.22065 0.89913 0.85553 1.01959 0.87898 1.25144 1.02937 0.98751 0.94147 0.85679 1.20764 0.91776 0.88218 0.93055 1.45491 1.33629 1.52810 1.02245 1.19403 1.00735 1.15611 1.01675 0.89758 1.25805 1.01686 1.00346 0.97769 1.70108 1.34591 1.45337 1.09677 0.85080 0.78825 0.78232 0.76729 1.19918 1.22040 1.20040 1.21296 0.96174 0.90473 0.90041 1.24252 0.97651 0.99166 0.96521 0.84283 0.93912 0.89138 0.93637 0.86112 0.85747 0.74244 0.99132 0.92446 0.94080 0.91500 0.96517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.61 16 2 C -0.13 -1.85 6.42 29.85 0.19 -1.66 16 3 C 0.50 12.95 7.83 87.66 0.69 13.64 16 4 O -0.59 -21.87 15.55 -3.04 -0.05 -21.92 16 5 N -0.68 -16.38 5.57 -435.44 -2.43 -18.80 16 6 C 0.11 3.75 6.19 46.50 0.29 4.04 16 7 H 0.10 4.14 7.40 -2.39 -0.02 4.12 16 8 C -0.19 -7.13 7.26 -8.28 -0.06 -7.19 16 9 H 0.13 4.21 8.14 -2.39 -0.02 4.19 16 10 C 0.19 9.62 5.72 86.53 0.49 10.11 16 11 N -0.62 -32.69 3.38 -688.16 -2.33 -35.02 16 12 C -0.25 -13.96 10.35 84.03 0.87 -13.09 16 13 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 14 C -0.06 -3.59 5.40 84.86 0.46 -3.13 16 15 N -0.95 -58.28 10.86 21.65 0.24 -58.05 16 16 Si 0.98 45.66 29.56 68.60 2.03 47.69 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.15 6.15 7.03 86.54 0.61 6.76 16 21 C -0.16 -5.19 6.91 -9.78 -0.07 -5.26 16 22 H 0.14 3.67 8.14 -2.38 -0.02 3.65 16 23 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.42 6.59 8.83 -92.71 -0.82 5.78 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.06 3.29 6.51 -2.38 -0.02 3.27 16 31 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -74.31 278.79 1.88 -72.43 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.28 Total: 11.07 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 4.13 Total: 2.61 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -4.52 Total: -111.87 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.05 Total: -21.92 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.31 1.88 -72.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957967983.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.901 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds