Wall clock time and date at job start Sun Mar 29 2020 21:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.55097 * 2 1 4 4 C 1.53000 * 117.49885 * 145.67981 * 2 1 3 5 5 C 1.53003 * 117.51307 * 214.30953 * 2 1 3 6 6 H 1.09004 * 117.50242 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49790 * 145.02842 * 5 2 1 8 8 O 1.21276 * 120.00313 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99885 * 179.97438 * 7 5 2 10 10 C 1.46504 * 120.00265 * 180.02562 * 9 7 5 11 11 C 1.53950 * 113.74062 * 253.74542 * 10 9 7 12 12 N 1.47812 * 86.03259 * 222.08131 * 11 10 9 13 13 C 1.36940 * 134.45306 * 204.64552 * 12 11 10 14 14 H 1.07996 * 119.99773 * 173.34756 * 13 12 11 15 15 C 1.38813 * 120.00049 * 353.33990 * 13 12 11 16 16 N 1.31619 * 119.99956 * 5.06948 * 15 13 12 17 17 Si 1.86798 * 119.99802 * 185.06215 * 15 13 12 18 18 H 1.48506 * 109.46979 * 94.99386 * 17 15 13 19 19 H 1.48503 * 109.47024 * 214.99045 * 17 15 13 20 20 H 1.48497 * 109.47544 * 334.99364 * 17 15 13 21 21 C 1.47575 * 91.05264 * 24.54829 * 12 11 10 22 22 H 1.08999 * 109.46966 * 325.57326 * 1 2 3 23 23 H 1.08989 * 109.47679 * 85.57677 * 1 2 3 24 24 H 1.09000 * 109.46982 * 205.57934 * 1 2 3 25 25 H 1.08994 * 117.49965 * 214.99538 * 4 2 1 26 26 H 1.09000 * 117.49717 * 0.02562 * 4 2 1 27 27 H 0.97001 * 120.00098 * 0.02562 * 9 7 5 28 28 H 1.08995 * 112.94083 * 25.32813 * 10 9 7 29 29 H 1.09003 * 113.76839 * 336.34138 * 11 10 9 30 30 H 1.09000 * 113.77028 * 107.73971 * 11 10 9 31 31 H 0.97004 * 119.99939 * 179.97438 * 16 15 13 32 32 H 1.09007 * 113.77034 * 221.15670 * 21 12 11 33 33 H 1.09001 * 113.87363 * 89.76779 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1209 0.7652 5 6 2.2368 -1.1209 -0.7649 6 1 1.6118 -1.8588 -1.2679 7 6 3.5297 -0.7808 -1.4604 8 8 3.9718 0.3469 -1.4010 9 7 4.1947 -1.7300 -2.1484 10 6 5.4520 -1.3996 -2.8241 11 6 5.3259 -1.3031 -4.3554 12 7 6.6106 -2.0323 -4.4043 13 6 7.6262 -2.1257 -5.3182 14 1 8.5315 -2.6581 -5.0668 15 6 7.4919 -1.5361 -6.5677 16 7 6.4326 -0.8037 -6.8393 17 14 8.8146 -1.7822 -7.8635 18 1 8.4363 -2.9130 -8.7486 19 1 8.9511 -0.5445 -8.6727 20 1 10.1080 -2.0846 -7.1995 21 6 6.3607 -2.6170 -3.0725 22 1 -0.3633 0.8477 0.5810 23 1 -0.3634 0.0792 -1.0245 24 1 -0.3633 -0.9270 0.4437 25 1 3.1714 -0.8749 1.2686 26 1 1.6112 -1.8585 1.2682 27 1 3.8410 -2.6319 -2.1962 28 1 5.9673 -0.5522 -2.3720 29 1 4.4858 -1.8653 -4.7633 30 1 5.3829 -0.2839 -4.7375 31 1 6.3389 -0.3914 -7.7123 32 1 7.2425 -2.6449 -2.4324 33 1 5.8255 -3.5662 -3.1009 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030069267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:18 Heat of formation + Delta-G solvation = 37.053002 kcal Electronic energy + Delta-G solvation = -15031.859897 eV Core-core repulsion = 12481.094475 eV Total energy + Delta-G solvation = -2550.765422 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81415 -37.95017 -36.39564 -33.44999 -31.79510 -28.92534 -27.46660 -24.83137 -24.50645 -22.48663 -20.88386 -19.90404 -19.36418 -17.14770 -16.77141 -15.82610 -15.02738 -14.66451 -14.49787 -13.81651 -13.80407 -13.37025 -12.85020 -12.64293 -12.10037 -11.92349 -11.51633 -11.45281 -11.43116 -10.88373 -10.80215 -10.47926 -10.37923 -10.13480 -10.02488 -9.55027 -9.42399 -8.80726 -8.40951 -6.91320 -5.79275 -3.12464 2.75677 3.38543 3.41973 3.46528 3.48950 3.83025 4.44949 4.68061 4.71716 4.80988 5.10546 5.21179 5.25662 5.46519 5.54547 5.58532 5.60623 5.63136 5.86185 5.92910 6.03233 6.21367 6.24323 6.42960 6.56856 6.79661 7.23753 7.36722 7.55857 7.92691 7.95746 8.60516 9.01878 9.68204 10.55872 11.38126 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.069760 B = 0.005057 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.279351 B = 5535.373307 C = 5735.728847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.125 4.125 3 H 0.117 0.883 4 C -0.151 4.151 5 C -0.189 4.189 6 H 0.121 0.879 7 C 0.539 3.461 8 O -0.545 6.545 9 N -0.712 5.712 10 C 0.090 3.910 11 C 0.157 3.843 12 N -0.607 5.607 13 C -0.227 4.227 14 H 0.082 0.918 15 C -0.005 4.005 16 N -0.917 5.917 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.113 3.887 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.397 0.603 28 H 0.109 0.891 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.255 0.745 32 H 0.049 0.951 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -2.755 13.173 16.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 H 0.135 0.865 4 C -0.189 4.189 5 C -0.210 4.210 6 H 0.139 0.861 7 C 0.325 3.675 8 O -0.423 6.423 9 N -0.361 5.361 10 C -0.014 4.014 11 C 0.031 3.969 12 N -0.334 5.334 13 C -0.355 4.355 14 H 0.100 0.900 15 C -0.202 4.202 16 N -0.563 5.563 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.014 4.014 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.231 0.769 28 H 0.127 0.873 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.864 -1.875 12.882 16.332 hybrid contribution 0.460 -0.790 -0.994 1.351 sum -9.403 -2.665 11.888 15.390 Atomic orbital electron populations 1.21392 0.92447 1.01948 1.02199 1.22356 0.95022 0.95259 1.01714 0.86514 1.23073 1.03046 1.01536 0.91211 1.22358 0.98205 1.04954 0.95491 0.86096 1.19618 0.84541 0.85043 0.78348 1.90682 1.68590 1.21036 1.62004 1.46073 1.24815 1.12855 1.52385 1.23911 0.83319 0.99417 0.94799 1.22653 0.87678 0.98228 0.88378 1.45712 1.18720 1.52107 1.16856 1.18999 0.93666 1.30665 0.92167 0.89994 1.24855 0.97924 1.00040 0.97385 1.69854 1.28792 1.35599 1.22064 0.86094 0.80700 0.77258 0.81688 1.21564 1.21613 1.20455 1.22863 0.95868 0.94033 0.88675 0.91845 0.91911 0.92505 0.88370 0.88051 0.76942 0.87298 0.95187 0.90953 0.93503 0.93316 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.19 37.16 0.38 -0.65 16 2 C -0.12 -1.37 5.92 -90.62 -0.54 -1.91 16 3 H 0.12 1.51 7.67 -51.93 -0.40 1.11 16 4 C -0.15 -1.49 9.88 -26.73 -0.26 -1.76 16 5 C -0.19 -2.23 5.91 -91.77 -0.54 -2.78 16 6 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 7 C 0.54 8.82 7.61 -10.99 -0.08 8.73 16 8 O -0.55 -11.22 15.88 5.56 0.09 -11.13 16 9 N -0.71 -11.36 5.37 -55.35 -0.30 -11.66 16 10 C 0.09 1.81 4.40 -70.15 -0.31 1.50 16 11 C 0.16 3.85 7.24 -2.84 -0.02 3.83 16 12 N -0.61 -15.88 3.70 -177.90 -0.66 -16.54 16 13 C -0.23 -6.48 10.70 -15.06 -0.16 -6.64 16 14 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.92 -27.81 11.51 55.49 0.64 -27.17 16 17 Si 0.91 22.32 29.56 -169.99 -5.02 17.29 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 24 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.10 0.76 8.05 -51.93 -0.42 0.35 16 27 H 0.40 5.12 8.71 -40.82 -0.36 4.76 16 28 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 2.01 7.37 -51.93 -0.38 1.63 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 283.68 15.07 4.27 4.27 Total: -1.00 -33.27 283.68 -7.50 -40.76 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.86 Total: 1.81 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -1.66 Total: 2.36 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.32 Total: -55.38 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.27 -7.50 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030069267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.817 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds