Wall clock time and date at job start Sun Mar 29 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37092 * 119.99952 * 2 1 4 4 H 1.08009 * 120.00310 * 201.57076 * 3 2 1 5 5 C 1.38957 * 120.00234 * 21.56773 * 3 2 1 6 6 N 1.31406 * 119.99590 * 14.86091 * 5 3 2 7 7 Si 1.86794 * 120.00022 * 194.86192 * 5 3 2 8 8 H 1.48502 * 109.47355 * 89.99758 * 7 5 3 9 9 H 1.48500 * 109.47176 * 209.99821 * 7 5 3 10 10 H 1.48507 * 109.47426 * 329.99675 * 7 5 3 11 11 C 1.34779 * 119.99874 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99871 * 180.02562 * 11 2 1 13 13 C 1.50700 * 120.00100 * 359.97438 * 11 2 1 14 14 C 1.54002 * 113.56424 * 179.97438 * 13 11 2 15 15 C 1.52643 * 86.67793 * 139.13935 * 14 13 11 16 16 C 1.52384 * 121.97754 * 102.60853 * 15 14 13 17 17 N 1.47708 * 87.66408 * 99.56969 * 16 15 14 18 18 C 1.47697 * 88.16637 * 25.95445 * 17 16 15 19 19 C 1.52644 * 88.34944 * 335.26712 * 15 14 13 20 20 H 1.09004 * 109.47146 * 270.70769 * 1 2 3 21 21 H 1.08995 * 109.47551 * 30.70884 * 1 2 3 22 22 H 1.09000 * 109.47518 * 150.71430 * 1 2 3 23 23 H 0.96998 * 119.99802 * 180.02562 * 6 5 3 24 24 H 1.08998 * 112.80924 * 48.94809 * 13 11 2 25 25 H 1.08993 * 113.68115 * 24.69586 * 14 13 11 26 26 H 1.08996 * 113.67973 * 253.58052 * 14 13 11 27 27 H 1.09003 * 113.53348 * 344.85685 * 16 15 14 28 28 H 1.09000 * 113.53325 * 214.28131 * 16 15 14 29 29 H 1.00897 * 110.99679 * 137.78243 * 17 16 15 30 30 H 1.09001 * 113.53268 * 88.69249 * 18 17 16 31 31 H 1.09001 * 113.53504 * 219.26317 * 18 17 16 32 32 H 1.09007 * 113.67614 * 139.17617 * 19 15 14 33 33 H 1.08995 * 113.67748 * 270.28476 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1738 1.2201 -0.3439 5 6 1.5286 2.3486 0.4424 6 7 0.4083 2.2747 1.1251 7 14 2.2853 4.0145 0.0664 8 1 1.7550 4.5189 -1.2257 9 1 1.9412 4.9703 1.1496 10 1 3.7615 3.8788 -0.0235 11 6 2.1388 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3853 -2.4723 -0.0005 14 6 2.3000 -3.7113 -0.0018 15 6 1.3210 -4.3251 0.9956 16 6 0.2961 -5.3733 0.5797 17 7 1.2135 -6.3971 1.1199 18 6 1.7590 -5.3637 2.0231 19 6 0.9127 -2.9104 1.3981 20 1 -0.3634 0.0127 1.0276 21 1 -0.3634 0.8835 -0.5248 22 1 -0.3634 -0.8963 -0.5027 23 1 -0.0259 3.0853 1.4336 24 1 0.6023 -2.5082 -0.7579 25 1 3.2899 -3.5251 0.4146 26 1 2.3322 -4.2307 -0.9595 27 1 0.1556 -5.4405 -0.4991 28 1 -0.6453 -5.3017 1.1244 29 1 0.7070 -7.0993 1.6379 30 1 1.2258 -5.2885 2.9708 31 1 2.8399 -5.4235 2.1505 32 1 -0.1595 -2.7922 1.5549 33 1 1.5095 -2.4972 2.2113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160583682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:26 Heat of formation + Delta-G solvation = 7.063790 kcal Electronic energy + Delta-G solvation = -15706.495045 eV Core-core repulsion = 13154.429193 eV Total energy + Delta-G solvation = -2552.065852 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.90764 -39.96562 -36.86091 -36.16757 -33.57703 -28.69494 -27.59331 -26.83622 -26.76499 -26.05900 -23.53581 -20.17939 -19.05518 -18.86518 -18.05689 -17.27720 -16.64949 -16.36398 -15.95640 -15.64307 -15.20140 -14.50444 -14.25505 -13.69438 -13.62037 -13.31164 -13.21142 -13.11364 -12.67270 -12.51319 -12.48562 -12.23511 -12.14307 -11.52207 -11.28464 -11.02850 -11.00810 -10.21695 -9.85958 -9.68082 -8.34013 -5.97060 1.36485 1.40097 1.52347 2.03804 2.28060 3.05303 3.07472 3.18565 3.45658 3.61309 3.73899 3.91070 4.26988 4.31517 4.42343 4.43869 4.72743 4.76475 4.81483 4.84338 4.89334 4.95700 5.03208 5.10799 5.13942 5.31789 5.38567 5.44505 5.48781 6.10463 6.42177 6.50459 7.18405 7.50522 8.07657 8.68256 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.062703 B = 0.006514 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.443046 B = 4297.603648 C = 4496.028936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.462 5.462 3 C -0.349 4.349 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.894 5.894 7 Si 0.988 3.012 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.278 1.278 11 C 0.443 3.557 12 O -0.640 6.640 13 C -0.121 4.121 14 C -0.082 4.082 15 C -0.107 4.107 16 C 0.035 3.965 17 N -0.638 5.638 18 C 0.016 3.984 19 C -0.096 4.096 20 H 0.046 0.954 21 H 0.049 0.951 22 H 0.069 0.931 23 H 0.274 0.726 24 H 0.122 0.878 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.331 0.669 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 -11.534 0.857 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.180 5.180 3 C -0.477 4.477 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.203 1.203 11 C 0.233 3.767 12 O -0.528 6.528 13 C -0.142 4.142 14 C -0.120 4.120 15 C -0.108 4.108 16 C -0.095 4.095 17 N -0.263 5.263 18 C -0.115 4.115 19 C -0.135 4.135 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.458 -11.576 0.338 12.803 hybrid contribution -0.106 1.398 0.662 1.550 sum -5.564 -10.178 1.000 11.643 Atomic orbital electron populations 1.21410 0.79260 1.00063 1.01035 1.43881 1.06823 1.04654 1.62638 1.19612 0.98798 0.85909 1.43365 0.91485 1.26046 0.97039 1.02737 0.94481 1.70074 1.19153 1.30339 1.33698 0.85021 0.78218 0.77099 0.78515 1.18963 1.19689 1.20307 1.20999 0.87753 0.86255 0.81649 1.90448 1.16498 1.88073 1.57818 1.22651 0.99654 0.90918 1.00991 1.22282 0.96940 0.93421 0.99318 1.22363 0.98198 0.92544 0.97699 1.23332 0.94781 0.88889 1.02449 1.67280 1.25575 1.07603 1.25828 1.23448 1.01611 0.90752 0.95649 1.22531 1.01929 0.94658 0.94363 0.93518 0.93176 0.91295 0.91677 0.86011 0.91569 0.90501 0.89268 0.88905 0.85572 0.89596 0.90806 0.88724 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.54 8.51 127.77 1.09 6.63 16 2 N -0.46 -24.51 3.02 -658.89 -1.99 -26.49 16 3 C -0.35 -20.46 9.29 84.04 0.78 -19.68 16 4 H 0.07 4.24 7.41 -2.91 -0.02 4.22 16 5 C 0.00 -0.06 5.03 84.93 0.43 0.37 16 6 N -0.89 -47.83 10.76 21.66 0.23 -47.59 16 7 Si 0.99 43.18 29.58 68.60 2.03 45.21 16 8 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 C 0.44 22.46 7.15 87.66 0.63 23.09 16 12 O -0.64 -38.05 15.57 -3.08 -0.05 -38.10 16 13 C -0.12 -4.38 2.95 -10.88 -0.03 -4.42 16 14 C -0.08 -2.74 7.23 30.81 0.22 -2.52 16 15 C -0.11 -2.80 1.32 -52.79 -0.07 -2.87 16 16 C 0.04 0.69 8.43 83.97 0.71 1.40 16 17 N -0.64 -13.17 8.71 -540.17 -4.70 -17.88 16 18 C 0.02 0.35 8.44 84.02 0.71 1.06 16 19 C -0.10 -2.95 7.42 30.81 0.23 -2.72 16 20 H 0.05 2.12 7.63 -2.38 -0.02 2.10 16 21 H 0.05 2.35 7.00 -2.39 -0.02 2.33 16 22 H 0.07 2.41 6.19 -2.39 -0.01 2.39 16 23 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 24 H 0.12 3.78 6.95 -2.39 -0.02 3.76 16 25 H 0.07 2.62 7.42 -2.39 -0.02 2.61 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.33 5.12 8.91 -89.70 -0.80 4.32 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 33 H 0.06 2.23 8.09 -2.39 -0.02 2.21 16 Total: -1.00 -69.56 271.48 0.52 -69.04 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.31 Total: 15.48 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: 4.69 Total: 0.34 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -6.46 Total: -91.96 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.05 Total: -38.10 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.56 0.52 -69.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160583682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.100 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds