Wall clock time and date at job start Sun Mar 29 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00082 * 2 1 4 4 H 1.48503 * 109.47175 * 270.00704 * 3 2 1 5 5 H 1.48500 * 109.47096 * 30.00211 * 3 2 1 6 6 H 1.48495 * 109.47278 * 150.00335 * 3 2 1 7 7 C 1.38813 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00035 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99662 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99590 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.22267 * 325.60660 * 10 9 7 12 12 C 1.52830 * 109.22225 * 85.00111 * 10 9 7 13 13 C 1.53749 * 109.88121 * 181.75986 * 12 10 9 14 14 N 1.47379 * 106.64794 * 307.16933 * 13 12 10 15 15 C 1.33678 * 127.74968 * 235.02082 * 14 13 12 16 16 O 1.21283 * 125.39751 * 340.55044 * 15 14 13 17 17 C 1.51502 * 109.21373 * 160.57942 * 15 14 13 18 18 C 1.54559 * 104.00784 * 25.14694 * 17 15 14 19 19 C 1.48151 * 121.10135 * 54.03769 * 14 13 12 20 20 H 1.09002 * 110.40794 * 65.15997 * 19 14 13 21 21 C 1.52727 * 107.15057 * 304.41286 * 19 14 13 22 22 H 0.97003 * 120.00153 * 359.97438 * 1 2 3 23 23 H 0.96994 * 120.00386 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.40550 * 61.63558 * 12 10 9 25 25 H 1.09004 * 109.33614 * 301.84089 * 12 10 9 26 26 H 1.09002 * 110.01454 * 187.88248 * 13 12 10 27 27 H 1.09002 * 110.01465 * 66.45565 * 13 12 10 28 28 H 1.08994 * 110.52423 * 266.51860 * 17 15 14 29 29 H 1.08999 * 110.52437 * 143.77458 * 17 15 14 30 30 H 1.09002 * 110.70727 * 97.40857 * 18 17 15 31 31 H 1.09005 * 110.70721 * 220.47084 * 18 17 15 32 32 H 1.09006 * 109.69847 * 294.88183 * 21 19 14 33 33 H 1.08998 * 109.64350 * 174.44988 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0017 11 1 2.9725 -3.5426 -0.5837 12 6 2.4196 -4.0303 1.4355 13 6 3.2277 -5.3382 1.4482 14 7 2.4424 -6.3271 0.6884 15 6 2.0337 -7.5337 1.0936 16 8 2.5050 -8.1610 2.0185 17 6 0.8891 -7.9938 0.2142 18 6 1.1041 -7.2278 -1.1109 19 6 1.9832 -6.0429 -0.6912 20 1 2.8359 -5.9483 -1.3637 21 6 1.1851 -4.7418 -0.6413 22 1 -0.4850 0.8401 0.0004 23 1 0.3556 -2.3881 0.0002 24 1 1.5066 -4.1631 2.0158 25 1 3.0162 -3.2318 1.8767 26 1 3.3670 -5.6807 2.4736 27 1 4.1953 -5.1836 0.9707 28 1 -0.0680 -7.7239 0.6605 29 1 0.9441 -9.0694 0.0470 30 1 1.6219 -7.8534 -1.8380 31 1 0.1530 -6.8786 -1.5129 32 1 0.2844 -4.8859 -0.0445 33 1 0.9101 -4.4415 -1.6523 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172153055.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:56 Heat of formation + Delta-G solvation = -26.330655 kcal Electronic energy + Delta-G solvation = -15708.082481 eV Core-core repulsion = 13154.568538 eV Total energy + Delta-G solvation = -2553.513943 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57001 -37.33274 -35.28578 -33.35228 -31.91153 -29.63009 -28.92879 -26.03852 -23.54739 -22.99057 -21.08805 -20.33529 -19.03049 -17.21745 -16.32048 -15.70847 -15.51340 -14.82961 -14.37483 -13.74667 -13.69286 -13.34619 -13.04241 -12.94633 -12.40904 -12.35759 -11.82064 -11.57372 -11.13936 -10.94055 -10.82922 -10.80548 -10.46797 -10.26782 -9.91670 -9.75618 -9.57800 -8.95320 -8.45932 -7.02449 -5.81712 -3.11064 2.67687 3.17885 3.40194 3.45699 3.47219 4.38660 4.52023 4.56090 4.79323 5.01900 5.27472 5.31587 5.40699 5.45954 5.54821 5.64923 5.67142 5.76051 5.83914 5.93725 5.94223 6.18565 6.29824 6.38832 6.50918 6.62056 6.88695 7.00188 7.37897 7.65019 8.32178 8.36628 9.48015 10.04711 10.39435 11.40849 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.053617 B = 0.006414 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.095510 B = 4364.482829 C = 4630.067807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.150 4.150 13 C 0.129 3.871 14 N -0.616 5.616 15 C 0.520 3.480 16 O -0.545 6.545 17 C -0.154 4.154 18 C -0.127 4.127 19 C 0.131 3.869 20 H 0.084 0.916 21 C -0.131 4.131 22 H 0.255 0.745 23 H 0.384 0.616 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -12.961 -2.673 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.191 4.191 13 C 0.007 3.993 14 N -0.350 5.350 15 C 0.308 3.692 16 O -0.423 6.423 17 C -0.194 4.194 18 C -0.165 4.165 19 C 0.027 3.973 20 H 0.102 0.898 21 C -0.170 4.170 22 H 0.065 0.935 23 H 0.217 0.783 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.669 -13.071 -2.126 13.509 hybrid contribution 0.114 1.107 0.057 1.115 sum 2.783 -11.963 -2.069 12.456 Atomic orbital electron populations 1.69659 1.05142 1.25731 1.57552 1.24746 0.95503 0.97725 1.02882 0.86202 0.78674 0.83849 0.77534 1.21687 1.21772 1.20749 1.19238 0.90992 0.84092 1.42899 0.91156 1.42431 1.05785 0.99677 1.88571 1.20141 0.94472 0.86103 0.92415 0.93503 1.22752 1.00029 0.94868 1.01481 1.21856 0.93820 0.87857 0.95738 1.48791 1.53804 1.16290 1.16160 1.20680 0.83451 0.80936 0.84117 1.90688 1.60618 1.58725 1.32249 1.22390 0.98841 1.02009 0.96203 1.22343 1.01236 0.96177 0.96717 1.21852 0.97221 0.95329 0.82902 0.89849 1.22220 0.98999 0.93595 1.02191 0.93467 0.78271 0.92242 0.90621 0.90272 0.91549 0.87900 0.88635 0.90117 0.89078 0.91519 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.24 -6.48 9.92 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.38 5.10 -53.39 -0.27 -17.65 16 10 C 0.18 3.32 2.66 -67.89 -0.18 3.14 16 11 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 12 C -0.15 -2.60 5.63 -26.43 -0.15 -2.75 16 13 C 0.13 1.92 6.95 -3.17 -0.02 1.90 16 14 N -0.62 -8.89 2.95 -163.60 -0.48 -9.38 16 15 C 0.52 7.87 8.01 -11.08 -0.09 7.78 16 16 O -0.54 -10.27 17.86 5.55 0.10 -10.17 16 17 C -0.15 -1.65 6.93 -26.67 -0.18 -1.84 16 18 C -0.13 -1.19 6.70 -25.71 -0.17 -1.36 16 19 C 0.13 1.61 3.59 -66.96 -0.24 1.37 16 20 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.13 -1.95 4.80 -26.75 -0.13 -2.08 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.38 9.85 7.80 -40.82 -0.32 9.53 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.76 7.82 -51.93 -0.41 0.35 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 271.64 15.07 4.09 4.09 Total: -1.00 -31.58 271.64 -7.18 -38.76 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.91 Total: 5.23 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.41 Total: -0.91 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.03 Total: -53.95 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.17 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.58 -7.18 -38.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172153055.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.434 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds