Wall clock time and date at job start Sun Mar 29 2020 21:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.50699 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99756 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99983 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99651 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47021 * 89.99759 * 10 8 6 12 12 H 1.48496 * 109.47269 * 210.00236 * 10 8 6 13 13 H 1.48499 * 109.47387 * 330.00504 * 10 8 6 14 14 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 15 15 C 1.46897 * 111.00133 * 275.00091 * 14 2 1 16 16 C 1.50705 * 109.47250 * 180.02562 * 15 14 2 17 17 N 1.30249 * 125.62201 * 89.69050 * 16 15 14 18 18 C 1.34476 * 108.70175 * 179.84020 * 17 16 15 19 19 C 1.34328 * 107.66496 * 0.42195 * 18 17 16 20 20 O 1.33969 * 125.61476 * 269.99986 * 16 15 14 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 25 25 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 26 26 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 27 27 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 28 28 H 0.97001 * 119.99673 * 179.97438 * 9 8 6 29 29 H 1.00901 * 110.99931 * 151.04418 * 14 2 1 30 30 H 1.09003 * 109.46826 * 299.99875 * 15 14 2 31 31 H 1.08993 * 109.47326 * 59.99934 * 15 14 2 32 32 H 1.08001 * 126.16880 * 180.16827 * 18 17 16 33 33 H 1.08003 * 126.44248 * 179.73199 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3685 -1.8030 -3.2140 8 6 5.4183 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0015 10 14 6.0409 -2.2398 -4.3417 11 1 6.0900 -1.2857 -5.4787 12 1 7.4025 -2.7735 -4.0840 13 1 5.1250 -3.3602 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5886 -0.5216 3.5557 17 7 3.8380 -0.6449 3.9025 18 6 3.9021 -1.3701 5.0332 19 6 2.6467 -1.7035 5.3753 20 8 1.8278 -1.1702 4.4475 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7715 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 3.8532 0.4369 -1.3574 27 1 3.9994 -1.0729 -0.4261 28 1 7.2195 -0.8003 -2.1926 29 1 2.9174 -1.1205 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0872 0.6162 2.5525 32 1 4.8012 -1.6396 5.5674 33 1 2.3494 -2.2892 6.2327 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172476826.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:34 Heat of formation + Delta-G solvation = -15.410399 kcal Electronic energy + Delta-G solvation = -15002.287457 eV Core-core repulsion = 12449.247051 eV Total energy + Delta-G solvation = -2553.040406 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.25243 -38.74065 -35.78149 -35.35888 -33.70104 -31.36973 -30.17617 -27.28615 -26.33494 -23.50269 -23.25543 -22.18534 -21.11777 -18.70330 -18.32112 -17.67742 -16.80287 -16.55196 -16.35300 -15.69760 -15.41862 -14.49008 -14.31640 -14.17535 -13.95450 -13.50204 -13.15772 -13.05094 -12.83078 -12.56924 -12.36625 -12.32098 -11.91938 -11.61140 -11.56553 -11.31869 -10.96680 -10.54902 -9.91253 -9.48764 -8.19671 -6.30870 0.48166 1.39334 1.40810 1.51951 1.68435 1.83777 2.40915 3.04966 3.13379 3.38744 3.98070 4.08783 4.13384 4.31167 4.40442 4.43392 4.49091 4.79161 4.85128 4.96862 4.99821 5.05353 5.08940 5.21523 5.32217 5.47398 5.54013 5.67610 5.84720 6.06122 6.19132 6.25771 6.78686 6.86431 7.38515 8.91668 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.006175 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.275857 B = 4533.029097 C = 5310.885182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.087 3.913 3 H 0.042 0.958 4 C -0.102 4.102 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.060 0.940 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.263 1.263 14 N -0.686 5.686 15 C 0.155 3.845 16 C 0.185 3.815 17 N -0.520 5.520 18 C -0.072 4.072 19 C -0.060 4.060 20 O -0.205 6.205 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.065 0.935 26 H -0.013 1.013 27 H -0.007 1.007 28 H 0.262 0.738 29 H 0.341 0.659 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.205 0.795 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.532 0.213 12.641 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.060 0.940 4 C -0.140 4.140 5 C -0.013 4.013 6 C -0.581 4.581 7 H 0.078 0.922 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.187 1.187 14 N -0.321 5.321 15 C 0.025 3.975 16 C -0.022 4.022 17 N -0.251 5.251 18 C -0.210 4.210 19 C -0.130 4.130 20 O -0.090 6.090 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.005 0.995 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.160 0.840 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.222 0.778 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -10.546 0.265 12.481 16.342 hybrid contribution 1.335 -0.218 -0.417 1.416 sum -9.211 0.047 12.064 15.178 Atomic orbital electron populations 1.21744 0.92392 1.02366 1.02183 1.21621 0.96856 0.95451 0.88230 0.94007 1.21660 0.95940 0.99927 0.96487 1.19027 0.92350 0.94631 0.95250 1.21698 0.92556 1.34607 1.09205 0.92179 1.25985 0.97411 0.96378 1.00091 1.70112 1.02724 1.45487 1.38968 0.85461 0.77521 0.78975 0.79179 1.19649 1.20936 1.18741 1.60748 1.34160 1.32477 1.04716 1.20347 1.02696 0.91513 0.82925 1.26356 0.84233 0.97242 0.94396 1.70490 1.20442 1.19413 1.14749 1.23901 1.00442 1.01603 0.95073 1.25958 0.88904 1.02083 0.96070 1.84462 1.40167 1.52914 1.31483 0.91523 0.91325 0.92457 0.92752 0.91633 0.99480 0.98881 0.92901 0.83983 0.91438 0.85786 0.77779 0.72114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.42 71.98 0.68 -2.60 16 2 C 0.09 2.89 2.65 44.92 0.12 3.01 16 3 H 0.04 1.40 7.80 -2.39 -0.02 1.38 16 4 C -0.10 -4.18 4.74 30.60 0.15 -4.03 16 5 C 0.02 1.30 4.80 29.85 0.14 1.45 16 6 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 9 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 10 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 N -0.69 -23.52 6.30 -495.57 -3.12 -26.64 16 15 C 0.15 4.53 6.11 85.56 0.52 5.05 16 16 C 0.18 5.82 7.85 88.34 0.69 6.51 16 17 N -0.52 -17.92 11.29 -303.83 -3.43 -21.35 16 18 C -0.07 -1.85 11.89 83.39 0.99 -0.86 16 19 C -0.06 -1.23 12.17 66.93 0.81 -0.42 16 20 O -0.21 -5.60 10.78 -3.70 -0.04 -5.64 16 21 H 0.07 1.42 7.45 -2.39 -0.02 1.40 16 22 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 25 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H -0.01 -0.40 6.43 -2.39 -0.02 -0.42 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.34 14.04 6.46 -89.69 -0.58 13.46 16 30 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 31 H 0.12 2.84 7.44 -2.39 -0.02 2.82 16 32 H 0.21 3.87 8.06 -2.91 -0.02 3.84 16 33 H 0.26 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -71.09 283.22 1.04 -70.06 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.52 Total: 16.84 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.80 Total: -22.61 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -6.27 Total: -105.78 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.04 Total: -5.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.09 1.04 -70.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476826.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.645 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds