Wall clock time and date at job start Sun Mar 29 2020 21:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 5 5 C 1.53001 * 109.47328 * 184.99912 * 4 2 1 6 6 C 1.50698 * 109.47370 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99617 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99914 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99874 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00025 * 359.97438 * 8 6 5 11 11 H 1.48491 * 109.47166 * 90.00039 * 10 8 6 12 12 H 1.48496 * 109.47035 * 210.00671 * 10 8 6 13 13 H 1.48499 * 109.46784 * 330.00057 * 10 8 6 14 14 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 15 15 C 1.46904 * 110.99949 * 85.00566 * 14 2 1 16 16 C 1.50702 * 109.47107 * 179.97438 * 15 14 2 17 17 C 1.34331 * 126.43984 * 89.99446 * 16 15 14 18 18 N 1.34482 * 107.66330 * 180.02562 * 17 16 15 19 19 C 1.30255 * 108.70300 * 0.02562 * 18 17 16 20 20 O 1.33967 * 108.76091 * 359.73122 * 19 18 17 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 25 25 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 26 26 H 1.09002 * 109.46786 * 300.00010 * 5 4 2 27 27 H 1.09001 * 109.46883 * 59.99398 * 5 4 2 28 28 H 0.96998 * 120.00329 * 180.02562 * 9 8 6 29 29 H 1.00900 * 110.99581 * 208.95322 * 14 2 1 30 30 H 1.09002 * 109.46523 * 299.99312 * 15 14 2 31 31 H 1.08997 * 109.46880 * 59.99279 * 15 14 2 32 32 H 1.07994 * 126.16883 * 0.02562 * 17 16 15 33 33 H 1.08005 * 125.61958 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.0673 -1.3242 2.5438 7 1 3.3688 -1.8046 3.2129 8 6 5.4186 -1.3605 2.8155 9 7 5.8569 -1.9805 3.8893 10 14 6.6266 -0.5290 1.6585 11 1 6.8312 0.8787 2.0846 12 1 7.9237 -1.2508 1.6949 13 1 6.0849 -0.5539 0.2760 14 7 2.0196 -0.6926 -1.1994 15 6 2.0825 0.2225 -2.3469 16 6 2.5884 -0.5217 -3.5558 17 6 1.8414 -1.1771 -4.4597 18 7 2.6754 -1.7016 -5.3750 19 6 3.8982 -1.3866 -5.0551 20 8 3.8748 -0.6511 -3.9356 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6055 -0.2617 2.1370 25 1 1.7517 -1.7715 1.2057 26 1 3.9995 -1.0729 0.4260 27 1 3.8532 0.4370 1.3572 28 1 6.8075 -2.0057 4.0807 29 1 2.9173 -1.1206 -1.0287 30 1 1.0871 0.6162 -2.5525 31 1 2.7589 1.0460 -2.1182 32 1 0.7652 -1.2665 -4.4526 33 1 4.7844 -1.6675 -5.6048 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:26 Heat of formation + Delta-G solvation = 11.372128 kcal Electronic energy + Delta-G solvation = -15095.033090 eV Core-core repulsion = 12543.154062 eV Total energy + Delta-G solvation = -2551.879028 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.31981 -37.52695 -34.71983 -33.66210 -32.32542 -30.16723 -29.04639 -25.79037 -24.70891 -22.68610 -21.38981 -21.12550 -19.74964 -17.67226 -16.85704 -16.63736 -15.60948 -15.21695 -14.92912 -14.33573 -14.03785 -13.40661 -12.89058 -12.79301 -12.62516 -12.48770 -11.95835 -11.67715 -11.38085 -11.34152 -11.02146 -10.77386 -10.51446 -10.01887 -9.82896 -9.53100 -9.23518 -8.91100 -8.58299 -8.30989 -6.07901 -4.06070 1.42058 2.67159 2.73595 3.26230 3.34285 3.36338 4.18829 4.40639 4.43819 4.73812 5.03471 5.19207 5.25337 5.31426 5.37708 5.55137 5.70562 5.75721 5.95508 6.00338 6.14863 6.28638 6.29607 6.35722 6.64354 6.77457 7.10466 7.21678 7.39466 7.53389 7.65677 7.75135 8.50249 8.97453 9.54409 11.05613 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.007404 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.133709 B = 3780.754670 C = 4682.673084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.042 0.958 4 C -0.107 4.107 5 C -0.016 4.016 6 C -0.519 4.519 7 H 0.073 0.927 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.879 3.121 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.267 1.267 14 N -0.683 5.683 15 C 0.142 3.858 16 C -0.036 4.036 17 C -0.027 4.027 18 N -0.492 5.492 19 C 0.165 3.835 20 O -0.204 6.204 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.012 0.988 27 H 0.008 0.992 28 H 0.263 0.737 29 H 0.354 0.646 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.183 0.817 33 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 5.170 -15.150 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 H 0.060 0.940 4 C -0.144 4.144 5 C -0.053 4.053 6 C -0.557 4.557 7 H 0.091 0.909 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.192 1.192 14 N -0.319 5.319 15 C 0.013 3.987 16 C -0.089 4.089 17 C -0.166 4.166 18 N -0.221 5.221 19 C -0.061 4.061 20 O -0.089 6.089 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.176 0.824 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.200 0.800 33 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.459 4.542 -15.703 17.968 hybrid contribution 1.848 1.208 0.202 2.216 sum -5.612 5.749 -15.501 17.459 Atomic orbital electron populations 1.21800 0.95052 1.02162 1.00526 1.21710 0.95129 0.96130 0.89960 0.94006 1.21673 0.98074 1.00243 0.94448 1.19622 0.91954 0.96247 0.97505 1.21110 0.92942 1.34367 1.07318 0.90923 1.25039 0.98417 0.94964 0.95030 1.69907 1.14650 1.43379 1.26170 0.86788 0.80744 0.79727 0.82049 1.20378 1.21312 1.19203 1.60704 1.35020 1.32028 1.04133 1.20363 1.00364 0.92420 0.85594 1.23474 0.80635 1.04655 1.00150 1.23007 1.01107 0.99972 0.92559 1.70442 1.00863 1.22737 1.28036 1.28035 0.98388 0.93739 0.85971 1.84464 1.29837 1.56725 1.37917 0.92573 0.93608 0.92019 0.91768 0.91676 0.96956 0.97349 0.92708 0.82403 0.87885 0.93381 0.79988 0.73691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.42 37.16 0.35 -1.40 16 2 C 0.08 1.22 2.65 -67.71 -0.18 1.04 16 3 H 0.04 0.63 7.80 -51.93 -0.41 0.23 16 4 C -0.11 -2.03 4.74 -26.73 -0.13 -2.16 16 5 C -0.02 -0.37 3.87 -27.88 -0.11 -0.48 16 6 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 7 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 9 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 10 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.34 6.54 56.52 0.37 -5.98 16 14 N -0.68 -10.39 6.30 -107.99 -0.68 -11.07 16 15 C 0.14 1.80 6.03 -4.97 -0.03 1.77 16 16 C -0.04 -0.48 6.90 -35.69 -0.25 -0.73 16 17 C -0.03 -0.36 11.80 -17.77 -0.21 -0.56 16 18 N -0.49 -6.69 11.29 -14.97 -0.17 -6.86 16 19 C 0.17 1.91 13.23 52.09 0.69 2.60 16 20 O -0.20 -2.84 10.78 5.37 0.06 -2.78 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.50 7.45 -51.93 -0.39 0.12 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.01 0.29 5.48 -51.93 -0.28 0.00 16 27 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.35 6.17 6.46 -39.29 -0.25 5.92 16 30 H 0.10 1.07 7.44 -51.93 -0.39 0.68 16 31 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.25 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -32.22 279.56 -5.42 -37.64 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.65 Total: 1.99 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -0.29 Total: -13.12 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.08 Total: -45.02 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.06 Total: -2.78 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.22 -5.42 -37.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.008 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds