Wall clock time and date at job start Sun Mar 29 2020 21:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47167 * 2 1 4 4 C 1.53006 * 109.46905 * 240.00004 * 2 1 3 5 5 C 1.53007 * 109.46976 * 174.99899 * 4 2 1 6 6 C 1.50699 * 109.46981 * 180.02562 * 5 4 2 7 7 H 1.07994 * 119.99938 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99782 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00288 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00153 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.46819 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47296 * 119.99727 * 10 8 6 13 13 H 1.48500 * 109.46864 * 240.00218 * 10 8 6 14 14 N 1.46895 * 109.47212 * 120.00271 * 2 1 3 15 15 C 1.46904 * 111.00147 * 274.99969 * 14 2 1 16 16 C 1.50699 * 109.46939 * 180.02562 * 15 14 2 17 17 C 1.34324 * 126.16544 * 95.00341 * 16 15 14 18 18 O 1.34753 * 107.11234 * 179.97438 * 17 16 15 19 19 C 1.33970 * 107.75658 * 359.97438 * 18 17 16 20 20 N 1.30256 * 108.75661 * 0.26839 * 19 18 17 21 21 H 1.08997 * 109.47169 * 299.99645 * 1 2 3 22 22 H 1.09004 * 109.47051 * 59.99938 * 1 2 3 23 23 H 1.08995 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47171 * 295.00224 * 4 2 1 25 25 H 1.08998 * 109.47091 * 55.00274 * 4 2 1 26 26 H 1.09001 * 109.47231 * 300.00483 * 5 4 2 27 27 H 1.08998 * 109.46904 * 60.00261 * 5 4 2 28 28 H 0.97003 * 120.00268 * 180.02562 * 9 8 6 29 29 H 1.00903 * 110.99869 * 38.95384 * 14 2 1 30 30 H 1.08995 * 109.46788 * 59.99822 * 15 14 2 31 31 H 1.09002 * 109.46608 * 299.99690 * 15 14 2 32 32 H 1.08003 * 126.44780 * 359.97438 * 17 16 15 33 33 H 1.08002 * 125.61757 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3138 6 6 4.0671 -1.3232 -2.5446 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3601 -2.8159 9 7 6.2690 -0.7763 -2.0004 10 14 6.0410 -2.2394 -4.3419 11 1 4.8908 -2.8091 -5.0888 12 1 6.7644 -1.2747 -5.2086 13 1 6.9625 -3.3330 -3.9417 14 7 2.0197 -0.6925 1.1994 15 6 2.0825 0.2225 2.3469 16 6 2.5886 -0.5217 3.5556 17 6 3.8623 -0.5729 3.9791 18 8 3.8813 -1.3395 5.0872 19 6 2.6266 -1.7440 5.3256 20 7 1.8471 -1.2577 4.4023 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7516 -1.7715 -1.2057 25 1 1.6054 -0.2617 -2.1370 26 1 3.8532 0.4370 -1.3574 27 1 3.9995 -1.0728 -0.4261 28 1 7.2197 -0.8020 -2.1915 29 1 1.4496 -1.4980 1.4099 30 1 1.0871 0.6162 2.5525 31 1 2.7590 1.0461 2.1182 32 1 4.7116 -0.0904 3.5182 33 1 2.3138 -2.3738 6.1454 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482266.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:31 Heat of formation + Delta-G solvation = -16.590105 kcal Electronic energy + Delta-G solvation = -14968.738676 eV Core-core repulsion = 12415.647115 eV Total energy + Delta-G solvation = -2553.091562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.20233 -38.67655 -36.07444 -35.13023 -33.28963 -31.38377 -29.97611 -27.06273 -26.14101 -23.62428 -23.15159 -22.11274 -21.32137 -18.49926 -18.29457 -17.50350 -16.59566 -16.40235 -16.25282 -15.62880 -15.55792 -14.62090 -14.40578 -14.14738 -13.74543 -13.46027 -13.18610 -12.95511 -12.85212 -12.59574 -12.29502 -12.17159 -11.78329 -11.55081 -11.51843 -11.20360 -10.95003 -10.47248 -9.86694 -9.16674 -8.12730 -6.22359 0.61091 1.40633 1.40971 1.54038 1.70067 2.06379 2.44718 3.19746 3.24786 3.52479 3.86396 4.07292 4.13729 4.35222 4.46344 4.58558 4.67067 4.79232 4.85390 4.98477 4.99947 5.06996 5.10529 5.29201 5.41563 5.48066 5.61098 5.90394 6.04494 6.22790 6.36828 6.51975 6.79164 6.97319 7.45492 8.98734 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.026907 B = 0.006162 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.365065 B = 4543.065533 C = 5328.954582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 H 0.069 0.931 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.542 4.542 7 H 0.053 0.947 8 C -0.001 4.001 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.280 1.280 14 N -0.685 5.685 15 C 0.146 3.854 16 C -0.032 4.032 17 C -0.058 4.058 18 O -0.213 6.213 19 C 0.178 3.822 20 N -0.519 5.519 21 H 0.060 0.940 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.052 0.948 26 H -0.019 1.019 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.340 0.660 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 0.706 12.922 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.580 4.580 7 H 0.072 0.928 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.784 3.216 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.205 1.205 14 N -0.316 5.316 15 C 0.017 3.983 16 C -0.150 4.150 17 C -0.130 4.130 18 O -0.099 6.099 19 C -0.049 4.049 20 N -0.248 5.248 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.158 0.842 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.244 0.756 33 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -8.519 0.717 12.759 15.358 hybrid contribution 0.454 -0.182 -0.528 0.720 sum -8.065 0.535 12.231 14.660 Atomic orbital electron populations 1.22388 0.95571 1.02293 1.02527 1.21555 0.93256 0.97295 0.89760 0.91261 1.21463 0.96735 0.98905 0.95533 1.18837 0.92017 0.94084 0.94993 1.21845 0.92490 1.34277 1.09375 0.92823 1.25920 0.97403 0.96521 0.99935 1.70114 1.02509 1.45749 1.38886 0.85486 0.78366 0.78327 0.79372 1.18809 1.20345 1.20544 1.60487 1.58393 1.09641 1.03127 1.20107 0.99885 0.93399 0.84886 1.21727 0.91216 1.02796 0.99260 1.25189 1.00806 0.98595 0.88395 1.84505 1.34480 1.51975 1.38968 1.29105 0.76011 0.99358 1.00411 1.70281 1.36112 1.13001 1.05411 0.92050 0.91283 0.92415 0.93835 0.92912 1.00039 0.97726 0.93048 0.84224 0.93192 0.89487 0.75609 0.69087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 9.16 71.98 0.66 -3.75 16 2 C 0.09 3.05 2.59 44.92 0.12 3.16 16 3 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 4 C -0.09 -3.71 4.83 30.60 0.15 -3.56 16 5 C 0.04 2.05 4.86 29.85 0.15 2.20 16 6 C -0.54 -31.89 9.11 25.60 0.23 -31.65 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 10 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 11 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 N -0.69 -23.15 5.69 -495.57 -2.82 -25.97 16 15 C 0.15 4.25 6.02 85.56 0.52 4.77 16 16 C -0.03 -0.92 6.62 41.26 0.27 -0.64 16 17 C -0.06 -1.57 12.08 66.93 0.81 -0.76 16 18 O -0.21 -5.16 10.78 -3.77 -0.04 -5.20 16 19 C 0.18 3.59 13.23 130.48 1.73 5.32 16 20 N -0.52 -14.15 11.29 -304.07 -3.43 -17.58 16 21 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 22 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 23 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 27 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 28 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 29 H 0.34 11.20 8.46 -89.69 -0.76 10.44 16 30 H 0.05 1.34 7.44 -2.39 -0.02 1.32 16 31 H 0.09 2.48 8.06 -2.39 -0.02 2.46 16 32 H 0.23 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.29 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -71.21 285.70 1.44 -69.78 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.33 Total: 13.64 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 5.09 Total: -24.49 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -5.97 Total: -101.21 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.04 Total: -5.20 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.21 1.44 -69.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482266.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.185 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds