Wall clock time and date at job start Sun Mar 29 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.08994 * 109.47015 * 305.00134 * 3 2 1 5 5 C 1.50697 * 109.46960 * 184.99924 * 3 2 1 6 6 H 1.08003 * 119.99620 * 239.99938 * 5 3 2 7 7 C 1.37869 * 120.00196 * 60.00253 * 5 3 2 8 8 N 1.31523 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46819 * 60.00200 * 9 7 5 11 11 H 1.48504 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47116 * 300.00042 * 9 7 5 13 13 N 1.46502 * 109.46720 * 64.99985 * 3 2 1 14 14 C 1.34779 * 120.00044 * 275.00028 * 13 3 2 15 15 O 1.21280 * 119.99863 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00023 * 180.02562 * 14 13 3 17 17 H 1.09005 * 110.28480 * 320.66987 * 16 14 13 18 18 C 1.54691 * 110.32707 * 82.90205 * 16 14 13 19 19 C 1.54828 * 100.79643 * 142.85578 * 18 16 14 20 20 C 1.51261 * 103.78494 * 336.47113 * 19 18 16 21 21 N 1.27274 * 111.24169 * 15.92390 * 20 19 18 22 22 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47033 * 300.00064 * 1 2 3 24 24 H 1.09005 * 109.47051 * 59.99985 * 1 2 3 25 25 H 1.09006 * 109.46922 * 239.99999 * 2 1 3 26 26 H 1.08993 * 109.46734 * 120.00271 * 2 1 3 27 27 H 0.96993 * 119.99889 * 180.02562 * 8 7 5 28 28 H 0.96997 * 119.99789 * 95.00340 * 13 3 2 29 29 H 1.08994 * 111.15207 * 260.74118 * 18 16 14 30 30 H 1.09000 * 111.14618 * 24.97273 * 18 16 14 31 31 H 1.08997 * 110.56042 * 217.89829 * 19 18 16 32 32 H 1.08998 * 110.56212 * 95.04654 * 19 18 16 33 33 H 1.07995 * 124.37893 * 196.19204 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1471 -0.2348 11 1 6.3978 0.2166 -2.6503 12 1 6.4995 2.2814 -1.3820 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0366 3.3385 2.6545 17 1 0.4005 2.7672 3.5086 18 6 0.5879 4.7832 2.6976 19 6 -0.5799 5.5184 3.3998 20 6 -1.7791 4.6399 3.1199 21 7 -1.4218 3.4846 2.7231 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8293 -0.0618 -2.9494 28 1 2.2720 2.1231 1.9978 29 1 1.5007 4.8383 3.2907 30 1 0.7500 5.1723 1.6924 31 1 -0.7225 6.5094 2.9690 32 1 -0.3985 5.5884 4.4723 33 1 -2.8057 4.9539 3.2372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187375125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:23 Heat of formation + Delta-G solvation = -21.149064 kcal Electronic energy + Delta-G solvation = -15628.074629 eV Core-core repulsion = 13074.785377 eV Total energy + Delta-G solvation = -2553.289253 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88631 -37.88878 -34.91012 -32.38480 -31.12445 -30.21823 -28.88886 -26.76123 -23.20783 -22.08329 -20.70109 -19.43262 -19.09706 -17.24480 -16.13170 -15.75519 -15.23386 -14.54678 -14.36825 -13.97658 -13.34787 -12.91907 -12.62340 -12.16798 -12.02311 -11.68884 -11.68759 -11.28390 -11.17750 -10.98097 -10.80243 -10.31919 -10.12450 -10.00257 -9.57137 -9.50980 -9.03258 -8.76066 -8.47126 -7.77659 -6.10873 -4.20695 2.27922 3.25434 3.30881 3.31823 3.37828 4.04468 4.33432 4.39985 4.56696 4.87278 4.98495 5.19970 5.25559 5.53854 5.60804 5.70019 5.82170 6.04119 6.32544 6.45425 6.53502 6.72937 7.10587 7.25215 7.42226 7.50055 7.63589 7.67687 7.78717 7.93003 8.20865 8.70428 8.80298 9.19255 9.46982 10.94404 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.007234 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.466966 B = 3869.828556 C = 4378.086278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.709 5.709 14 C 0.515 3.485 15 O -0.533 6.533 16 C 0.018 3.982 17 H 0.107 0.893 18 C -0.139 4.139 19 C -0.148 4.148 20 C 0.117 3.883 21 N -0.462 5.462 22 H 0.022 0.978 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.030 0.970 27 H 0.265 0.735 28 H 0.387 0.613 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 7.721 11.147 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.298 3.702 15 O -0.409 6.409 16 C -0.095 4.095 17 H 0.125 0.875 18 C -0.178 4.178 19 C -0.188 4.188 20 C -0.098 4.098 21 N -0.167 5.167 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.219 0.781 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.131 6.578 9.908 12.953 hybrid contribution 1.869 0.620 0.512 2.034 sum -3.262 7.198 10.421 13.078 Atomic orbital electron populations 1.21842 0.98229 0.98038 1.01402 1.21936 0.92699 0.99786 1.02191 1.18764 0.94085 0.89180 0.80944 0.93440 1.21197 0.90725 1.39121 1.06274 0.92174 1.24891 0.98579 0.94821 0.95391 1.69892 1.35211 1.37492 1.09354 0.86517 0.84887 0.78271 0.77464 1.20170 1.21111 1.20220 1.46465 1.14499 1.56149 1.18615 1.19797 0.82812 0.79361 0.88221 1.90672 1.51216 1.58965 1.40075 1.23030 0.90055 0.97613 0.98809 0.87539 1.23001 0.98727 0.93718 1.02395 1.22539 0.93719 1.00828 1.01691 1.26701 0.99684 0.91160 0.92249 1.72730 1.12101 1.21859 1.10031 0.95893 0.94031 0.93266 0.88335 0.95086 0.92500 0.78145 0.89421 0.89945 0.89633 0.89365 0.81056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.52 37.16 0.32 -2.95 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 6.99 2.24 -69.08 -0.15 6.83 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.71 -15.04 5.02 -54.93 -0.28 -15.31 16 14 C 0.51 10.74 5.59 -10.99 -0.06 10.68 16 15 O -0.53 -13.33 13.73 5.56 0.08 -13.25 16 16 C 0.02 0.29 3.95 -68.07 -0.27 0.02 16 17 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 18 C -0.14 -1.75 6.78 -24.88 -0.17 -1.92 16 19 C -0.15 -1.42 6.90 -26.64 -0.18 -1.60 16 20 C 0.12 1.35 12.07 -13.89 -0.17 1.18 16 21 N -0.46 -7.49 10.62 -52.30 -0.56 -8.05 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.98 5.64 -51.93 -0.29 0.69 16 24 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 25 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.39 7.06 8.54 -40.82 -0.35 6.71 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.19 7.90 -51.93 -0.41 0.78 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.17 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 273.45 15.07 4.12 4.12 Total: -1.00 -32.34 273.45 -6.92 -39.26 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.66 Total: 5.89 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.23 Total: -3.93 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.21 Total: -47.74 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.34 -6.92 -39.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187375125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.115 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds