Wall clock time and date at job start Sun Mar 29 2020 21:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47209 * 2 1 4 4 H 1.08994 * 109.47015 * 305.00134 * 3 2 1 5 5 C 1.50697 * 109.46960 * 184.99924 * 3 2 1 6 6 H 1.08003 * 119.99620 * 239.99938 * 5 3 2 7 7 C 1.37869 * 120.00196 * 60.00253 * 5 3 2 8 8 N 1.31523 * 119.99952 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46819 * 60.00200 * 9 7 5 11 11 H 1.48504 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47116 * 300.00042 * 9 7 5 13 13 N 1.46502 * 109.46720 * 64.99985 * 3 2 1 14 14 C 1.34779 * 120.00044 * 275.00028 * 13 3 2 15 15 O 1.21280 * 119.99863 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00023 * 180.02562 * 14 13 3 17 17 H 1.09005 * 110.28480 * 320.66987 * 16 14 13 18 18 C 1.54691 * 110.32707 * 82.90205 * 16 14 13 19 19 C 1.54828 * 100.79643 * 142.85578 * 18 16 14 20 20 C 1.51261 * 103.78494 * 336.47113 * 19 18 16 21 21 N 1.27274 * 111.24169 * 15.92390 * 20 19 18 22 22 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47033 * 300.00064 * 1 2 3 24 24 H 1.09005 * 109.47051 * 59.99985 * 1 2 3 25 25 H 1.09006 * 109.46922 * 239.99999 * 2 1 3 26 26 H 1.08993 * 109.46734 * 120.00271 * 2 1 3 27 27 H 0.96993 * 119.99889 * 180.02562 * 8 7 5 28 28 H 0.96997 * 119.99789 * 95.00340 * 13 3 2 29 29 H 1.08994 * 111.15207 * 260.74118 * 18 16 14 30 30 H 1.09000 * 111.14618 * 24.97273 * 18 16 14 31 31 H 1.08997 * 110.56042 * 217.89829 * 19 18 16 32 32 H 1.08998 * 110.56212 * 95.04654 * 19 18 16 33 33 H 1.07995 * 124.37893 * 196.19204 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1471 -0.2348 11 1 6.3978 0.2166 -2.6503 12 1 6.4995 2.2814 -1.3820 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0366 3.3385 2.6545 17 1 0.4005 2.7672 3.5086 18 6 0.5879 4.7832 2.6976 19 6 -0.5799 5.5184 3.3998 20 6 -1.7791 4.6399 3.1199 21 7 -1.4218 3.4846 2.7231 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8293 -0.0618 -2.9494 28 1 2.2720 2.1231 1.9978 29 1 1.5007 4.8383 3.2907 30 1 0.7500 5.1723 1.6924 31 1 -0.7225 6.5094 2.9690 32 1 -0.3985 5.5884 4.4723 33 1 -2.8057 4.9539 3.2372 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187375125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:23 Heat of formation + Delta-G solvation = -45.794810 kcal Electronic energy + Delta-G solvation = -15629.143349 eV Core-core repulsion = 13074.785377 eV Total energy + Delta-G solvation = -2554.357973 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24250 -39.31208 -36.83723 -34.32725 -32.98555 -31.30788 -30.14521 -28.65257 -25.13782 -23.45571 -22.05117 -21.23951 -20.44494 -18.89319 -17.71452 -17.21204 -16.88590 -16.21253 -15.86674 -15.42924 -14.91114 -14.60756 -13.96599 -13.75824 -13.57945 -13.22371 -13.13277 -12.90917 -12.67814 -12.61752 -12.55510 -12.19409 -12.07076 -11.62827 -11.13724 -11.07962 -10.57812 -10.51208 -10.27231 -9.65069 -8.17107 -6.35490 1.34491 1.44097 1.46232 1.54190 1.80804 2.35374 2.64917 3.11780 3.36409 3.59497 3.92217 4.01935 4.12689 4.37951 4.44048 4.52915 4.63065 4.73001 4.87132 5.01885 5.02733 5.11223 5.21241 5.40380 5.46688 5.52991 5.60793 5.75983 5.91348 6.14095 6.72476 6.76653 6.99687 7.32100 7.59012 8.88382 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.007234 C = 0.006394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.466966 B = 3869.828556 C = 4378.086278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.973 3.027 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.704 5.704 14 C 0.508 3.492 15 O -0.582 6.582 16 C 0.025 3.975 17 H 0.124 0.876 18 C -0.139 4.139 19 C -0.139 4.139 20 C 0.140 3.860 21 N -0.530 5.530 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 8.996 13.594 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.354 5.354 14 C 0.294 3.706 15 O -0.462 6.462 16 C -0.088 4.088 17 H 0.142 0.858 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.073 4.073 21 N -0.238 5.238 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.238 0.762 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.430 7.876 12.409 15.351 hybrid contribution 1.559 0.297 -0.245 1.606 sum -2.872 8.174 12.164 14.933 Atomic orbital electron populations 1.21661 0.97251 0.99016 1.00002 1.21794 0.93449 0.99379 1.01325 1.18339 0.93761 0.88989 0.81289 0.98860 1.21549 0.91216 1.39125 1.06831 0.90833 1.25823 1.03570 0.94279 0.94937 1.70057 1.37288 1.38273 1.09912 0.85385 0.78758 0.78515 0.77598 1.18808 1.21203 1.19517 1.46233 1.15442 1.56053 1.17659 1.20814 0.81683 0.78334 0.89737 1.90636 1.52473 1.60670 1.42433 1.22950 0.91138 0.99050 0.95657 0.85797 1.23069 1.01205 0.91732 1.01858 1.22598 0.91042 1.00762 1.03419 1.27450 1.01977 0.89787 0.88109 1.72778 1.11840 1.24727 1.14413 0.93542 0.94147 0.95884 0.90874 0.93997 0.92561 0.76231 0.86817 0.92698 0.87512 0.86008 0.77611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.52 71.98 0.61 -5.35 16 2 C -0.12 -6.24 5.45 30.60 0.17 -6.07 16 3 C 0.28 14.87 2.24 44.24 0.10 14.97 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.25 16 6 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -53.48 11.29 21.45 0.24 -53.23 16 9 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 10 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.70 -30.32 5.02 -446.10 -2.24 -32.56 16 14 C 0.51 21.62 5.59 87.66 0.49 22.11 16 15 O -0.58 -30.47 13.73 -3.03 -0.04 -30.51 16 16 C 0.02 0.76 3.95 44.78 0.18 0.94 16 17 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 18 C -0.14 -3.19 6.78 31.79 0.22 -2.97 16 19 C -0.14 -2.09 6.90 30.65 0.21 -1.87 16 20 C 0.14 2.78 12.07 88.95 1.07 3.86 16 21 N -0.53 -16.54 10.62 -317.95 -3.38 -19.92 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.96 5.64 -2.39 -0.01 1.94 16 24 H 0.02 1.20 7.85 -2.38 -0.02 1.18 16 25 H 0.07 4.18 5.95 -2.38 -0.01 4.17 16 26 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.40 14.48 8.54 -92.71 -0.79 13.69 16 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 1.55 7.90 -2.39 -0.02 1.53 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -74.02 273.45 0.64 -73.38 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.31 Total: 21.00 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 3.72 Total: -2.43 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.37 Total: -105.71 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.04 Total: -30.51 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -74.02 0.64 -73.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187375125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.584 kcal (2) G-P(sol) polarization free energy of solvation -74.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds