Wall clock time and date at job start Sun Mar 29 2020 22:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 O 1.42905 * 109.46728 * 180.02562 * 11 10 9 13 13 C 1.42899 * 113.99778 * 179.97438 * 12 11 10 14 14 H 1.08998 * 110.35976 * 27.66852 * 13 12 11 15 15 C 1.54580 * 110.40283 * 265.21885 * 13 12 11 16 16 C 1.55949 * 104.63631 * 242.42570 * 15 13 12 17 17 H 1.09000 * 116.26818 * 198.96206 * 16 15 13 18 18 C 1.55918 * 105.23004 * 69.19117 * 16 15 13 19 19 C 1.54583 * 104.64602 * 290.00219 * 18 16 15 20 20 C 1.55923 * 104.64233 * 359.97438 * 19 18 16 21 21 H 1.08998 * 115.92422 * 199.16156 * 20 19 18 22 22 C 1.56956 * 101.41317 * 325.98241 * 20 19 18 23 23 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 25 25 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 26 26 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 27 27 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 28 28 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 29 29 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 30 30 H 1.09004 * 110.39884 * 0.02562 * 15 13 12 31 31 H 1.08995 * 110.40183 * 122.41636 * 15 13 12 32 32 H 1.08999 * 110.40183 * 171.20903 * 18 16 15 33 33 H 1.09002 * 110.40129 * 48.79139 * 18 16 15 34 34 H 1.09002 * 110.40138 * 241.20974 * 19 18 16 35 35 H 1.08997 * 110.50405 * 118.83907 * 19 18 16 36 36 H 1.08993 * 112.02574 * 170.50168 * 22 20 19 37 37 H 1.09003 * 112.01961 * 297.02133 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 8 2.4091 -6.0732 0.0005 13 6 1.7946 -7.3633 0.0005 14 1 0.8146 -7.3166 -0.4744 15 6 1.6713 -7.9014 1.4444 16 6 2.5434 -9.1942 1.4589 17 1 2.3489 -9.8982 2.2680 18 6 4.0153 -8.6968 1.3272 19 6 4.1215 -8.1698 -0.1222 20 6 2.7040 -8.3991 -0.7298 21 1 2.6465 -8.3997 -1.8183 22 6 2.2689 -9.7252 -0.0116 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 2.8721 -3.6043 0.8905 27 1 2.8721 -3.6042 -0.8895 28 1 0.8541 -5.0446 -0.8903 29 1 0.8535 -5.0451 0.8897 30 1 2.0790 -7.1817 2.1542 31 1 0.6301 -8.1207 1.6806 32 1 4.7105 -9.5216 1.4836 33 1 4.2102 -7.8942 2.0385 34 1 4.8690 -8.7356 -0.6783 35 1 4.3695 -7.1084 -0.1253 36 1 1.2197 -9.9609 -0.1891 37 1 2.9199 -10.5611 -0.2677 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205671915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:36 Heat of formation + Delta-G solvation = -69.094073 kcal Electronic energy + Delta-G solvation = -15438.049677 eV Core-core repulsion = 12986.221716 eV Total energy + Delta-G solvation = -2451.827961 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20445 -36.76230 -33.74658 -31.48948 -30.00263 -28.99058 -27.38656 -26.18137 -22.92197 -21.95054 -20.37387 -19.90152 -18.75750 -16.64008 -16.29933 -15.99804 -15.37479 -14.80500 -14.43251 -13.81299 -13.06975 -12.87847 -12.42589 -12.24566 -11.78778 -11.62526 -11.48000 -11.31696 -11.11579 -11.00409 -10.89199 -10.77773 -10.56766 -10.50743 -10.18076 -9.85740 -9.77301 -9.39954 -9.08898 -9.04533 -8.33449 -5.98926 -4.01176 3.35346 3.39070 3.42126 4.00040 4.38815 4.46989 4.50259 4.63564 5.14664 5.18892 5.27266 5.31199 5.36926 5.42473 5.49591 5.58673 5.71199 5.78969 5.79738 5.84740 5.95862 6.03338 6.08379 6.12447 6.24258 6.26609 6.37513 6.50713 6.72950 6.78593 7.12887 7.65953 7.73200 7.81303 8.00769 8.43964 9.05339 9.62749 11.12642 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.062393 B = 0.004526 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.663936 B = 6185.600813 C = 6337.336035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.107 4.107 11 C 0.062 3.938 12 O -0.378 6.378 13 C 0.084 3.916 14 H 0.059 0.941 15 C -0.143 4.143 16 C -0.102 4.102 17 H 0.094 0.906 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.101 4.101 21 H 0.097 0.903 22 C -0.126 4.126 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -18.946 0.968 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.144 4.144 11 C -0.014 4.014 12 O -0.297 6.297 13 C 0.026 3.974 14 H 0.077 0.923 15 C -0.181 4.181 16 C -0.121 4.121 17 H 0.112 0.888 18 C -0.155 4.155 19 C -0.154 4.154 20 C -0.119 4.119 21 H 0.115 0.885 22 C -0.164 4.164 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.108 -18.769 0.973 19.238 hybrid contribution 0.029 0.973 0.016 0.974 sum 4.137 -17.796 0.989 18.297 Atomic orbital electron populations 1.69957 1.06076 1.26733 1.50877 1.25024 0.94860 0.99279 0.95295 0.86628 0.79554 0.82989 0.78664 1.20207 1.21284 1.20206 1.21191 0.93087 0.90902 1.50610 0.92604 1.19042 0.93932 0.91113 0.97266 1.21637 0.99590 0.91867 1.01353 1.22804 0.92240 0.87186 0.99210 1.87925 1.33908 1.13083 1.94813 1.23077 0.95509 0.84215 0.94606 0.92279 1.23159 0.99504 0.97512 0.97903 1.23817 0.95451 0.96139 0.96648 0.88801 1.22553 0.95542 0.99923 0.97471 1.22453 0.95623 1.02400 0.94929 1.23655 0.96078 0.93673 0.98485 0.88525 1.23868 1.00631 0.96548 0.95326 0.92943 0.96549 0.96539 0.92707 0.92689 0.94020 0.94066 0.90706 0.91669 0.92388 0.91560 0.92574 0.89883 0.91222 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.35 5.52 -26.73 -0.15 -2.49 16 11 C 0.06 1.15 5.78 37.16 0.21 1.36 16 12 O -0.38 -6.46 8.39 -35.23 -0.30 -6.76 16 13 C 0.08 1.15 3.07 -24.30 -0.07 1.08 16 14 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 15 C -0.14 -1.75 6.04 -24.32 -0.15 -1.90 16 16 C -0.10 -1.05 5.21 -84.30 -0.44 -1.49 16 17 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.12 -1.29 6.24 -24.34 -0.15 -1.44 16 19 C -0.12 -1.40 6.11 -24.34 -0.15 -1.55 16 20 C -0.10 -1.18 5.02 -85.32 -0.43 -1.61 16 21 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 22 C -0.13 -1.22 6.55 -21.41 -0.14 -1.36 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.02 7.70 -51.93 -0.40 0.62 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.79 7.86 -51.93 -0.41 0.38 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.19 6.79 -51.93 -0.35 0.84 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -30.13 293.64 -8.77 -38.90 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -6.60 Total: -4.21 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.01 Total: -22.74 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -6.46 SS G_CDS: -0.30 Total: -6.76 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.13 -8.77 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205671915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.190 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds