Wall clock time and date at job start Sun Mar 29 2020 21:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.46729 * 2 1 4 4 C 1.42903 * 113.99783 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47259 * 330.00008 * 4 3 2 6 6 C 1.53002 * 109.47106 * 90.00188 * 4 3 2 7 7 N 1.46504 * 109.47074 * 210.00215 * 4 3 2 8 8 C 1.34943 * 126.03826 * 5.25613 * 7 4 3 9 9 C 1.35314 * 107.74537 * 180.14714 * 8 7 4 10 10 C 1.50706 * 126.04126 * 179.87408 * 9 8 7 11 11 C 1.50698 * 109.47294 * 269.72281 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47454 * 59.99696 * 15 13 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46926 * 299.99488 * 15 13 11 19 19 C 1.39871 * 107.92188 * 359.61804 * 9 8 7 20 20 N 1.30839 * 108.19988 * 0.23776 * 19 9 8 21 21 H 1.09000 * 109.46986 * 299.99999 * 1 2 3 22 22 H 1.08996 * 109.46885 * 60.00078 * 1 2 3 23 23 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47354 * 240.00371 * 2 1 3 25 25 H 1.09002 * 109.47496 * 119.99661 * 2 1 3 26 26 H 1.08994 * 109.47149 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.46942 * 300.00286 * 6 4 3 28 28 H 1.09001 * 109.47209 * 59.99789 * 6 4 3 29 29 H 1.07997 * 126.12620 * 0.02562 * 8 7 4 30 30 H 1.09001 * 109.46953 * 29.71724 * 10 9 8 31 31 H 1.09000 * 109.47318 * 149.71321 * 10 9 8 32 32 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 33 33 H 1.07997 * 125.89735 * 180.21962 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9398 1.5003 -1.4417 7 7 3.8228 2.6913 0.6912 8 6 2.9931 3.5404 1.3327 9 6 3.7421 4.5509 1.8316 10 6 3.2300 5.7284 2.6206 11 6 2.8847 6.8526 1.6784 12 1 3.0228 6.7273 0.6146 13 6 2.3937 8.0416 2.1745 14 7 2.2261 8.1944 3.4700 15 14 1.9664 9.4355 1.0067 16 1 0.9179 8.9824 0.0576 17 1 1.4616 10.5957 1.7842 18 1 3.1795 9.8364 0.2497 19 6 5.0764 4.3066 1.4905 20 7 5.1260 3.1921 0.8069 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 5.0263 1.5869 -1.4413 27 1 3.6481 0.5844 -1.9556 28 1 3.5075 2.3587 -1.9559 29 1 1.9227 3.4337 1.4289 30 1 2.3397 5.4338 3.1763 31 1 3.9994 6.0613 3.3173 32 1 1.8802 9.0308 3.8190 33 1 5.9200 4.9303 1.7470 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054591.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:07 Heat of formation + Delta-G solvation = 4.911677 kcal Electronic energy + Delta-G solvation = -15106.453534 eV Core-core repulsion = 12554.294360 eV Total energy + Delta-G solvation = -2552.159174 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.04763 -39.40989 -35.51340 -34.30096 -32.34916 -31.52212 -30.80745 -28.30579 -25.18273 -24.35522 -23.59601 -21.47453 -20.86888 -18.60245 -18.35632 -17.64576 -16.75715 -16.47877 -15.69735 -15.32172 -14.68284 -14.45154 -14.20832 -14.06637 -13.86901 -13.41212 -13.19324 -13.04963 -12.97323 -12.70810 -12.49215 -12.42202 -12.16549 -11.86820 -11.52047 -11.30162 -10.93970 -10.52319 -10.20401 -9.09845 -8.11264 -6.24211 0.99598 1.33538 1.41765 1.44680 1.52716 2.04009 2.47818 2.63887 3.17528 3.63615 3.78856 4.03190 4.16029 4.18158 4.26502 4.42579 4.52768 4.60949 4.75336 4.85494 4.92555 4.99456 5.11775 5.19251 5.26522 5.42880 5.66550 5.82808 5.84247 6.03658 6.19583 6.32923 6.87812 6.88575 7.43539 8.96501 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.029631 B = 0.006355 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.728960 B = 4404.662428 C = 4772.914115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.409 6.409 4 C 0.334 3.666 5 H 0.099 0.901 6 C -0.168 4.168 7 N -0.385 5.385 8 C 0.055 3.945 9 C -0.221 4.221 10 C 0.097 3.903 11 C -0.524 4.524 12 H 0.047 0.953 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.269 1.269 19 C 0.043 3.957 20 N -0.305 5.305 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.170 0.830 30 H -0.001 1.001 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -17.518 -8.352 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.327 6.327 4 C 0.195 3.805 5 H 0.117 0.883 6 C -0.226 4.226 7 N -0.172 5.172 8 C -0.090 4.090 9 C -0.232 4.232 10 C 0.059 3.941 11 C -0.562 4.562 12 H 0.066 0.934 13 C -0.193 4.193 14 N -0.571 5.571 15 Si 0.786 3.214 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.194 1.194 19 C -0.141 4.141 20 N -0.129 5.129 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.119 0.881 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.069 0.931 29 H 0.187 0.813 30 H 0.017 0.983 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.039 -18.245 -8.927 20.312 hybrid contribution -0.735 1.503 0.288 1.697 sum -0.774 -16.742 -8.639 18.855 Atomic orbital electron populations 1.21793 0.92540 1.03824 1.02651 1.22889 0.96491 0.80595 1.02148 1.87860 1.19329 1.30654 1.94898 1.21838 0.81865 0.83421 0.93425 0.88318 1.22419 1.02477 1.04064 0.93686 1.48939 1.04839 1.20368 1.43037 1.22163 0.97634 0.91697 0.97529 1.20672 0.93604 0.99787 1.09130 1.17332 0.94271 0.89245 0.93231 1.21430 1.42581 0.98885 0.93345 0.93431 1.25867 0.95563 1.01121 0.96711 1.70070 1.46839 1.26826 1.13405 0.85569 0.78782 0.78321 0.78760 1.19673 1.20447 1.19422 1.24000 0.98031 0.94712 0.97402 1.77064 0.98070 1.13748 1.23995 0.92949 0.92179 0.88116 0.90323 0.91839 0.90457 0.87532 0.93089 0.81270 0.98282 0.97662 0.92687 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.28 71.98 0.74 -1.52 16 2 C 0.05 0.89 6.47 71.98 0.47 1.36 16 3 O -0.41 -10.62 9.16 -148.98 -1.36 -11.98 16 4 C 0.33 8.85 4.02 86.38 0.35 9.20 16 5 H 0.10 2.15 7.79 -2.39 -0.02 2.13 16 6 C -0.17 -3.75 9.71 71.98 0.70 -3.05 16 7 N -0.38 -14.09 3.68 -442.45 -1.63 -15.72 16 8 C 0.05 2.31 10.78 83.54 0.90 3.21 16 9 C -0.22 -10.43 5.29 -20.14 -0.11 -10.54 16 10 C 0.10 5.41 5.46 29.10 0.16 5.57 16 11 C -0.52 -30.97 9.09 25.60 0.23 -30.73 16 12 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 13 C 0.01 0.30 5.46 84.65 0.46 0.76 16 14 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 15 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 C 0.04 1.83 11.96 85.24 1.02 2.84 16 20 N -0.31 -11.89 12.42 -57.02 -0.71 -12.60 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 25 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.17 6.86 7.79 -2.91 -0.02 6.84 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.19 7.21 8.06 -2.91 -0.02 7.18 16 Total: -1.00 -69.82 288.43 4.60 -65.22 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.07 Total: 7.35 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: 4.92 Total: -22.91 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.05 Total: -85.13 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.36 Total: -11.98 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.82 4.60 -65.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054591.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.134 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds