Wall clock time and date at job start Sun Mar 29 2020 21:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42906 * 109.47321 * 240.00014 * 2 1 3 5 5 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 6 6 N 1.46504 * 109.47051 * 185.00029 * 5 2 1 7 7 C 1.34947 * 126.03741 * 124.99733 * 6 5 2 8 8 C 1.35317 * 107.74184 * 179.97438 * 7 6 5 9 9 C 1.50698 * 126.03286 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47104 * 90.00601 * 9 8 7 11 11 H 1.08003 * 119.99831 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00463 * 179.97438 * 10 9 8 13 13 N 1.31522 * 119.99560 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00401 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47166 * 89.99648 * 14 12 10 16 16 H 1.48509 * 109.46854 * 209.99711 * 14 12 10 17 17 H 1.48497 * 109.46777 * 329.99461 * 14 12 10 18 18 C 1.39864 * 107.92456 * 0.02562 * 8 7 6 19 19 N 1.30839 * 108.19943 * 359.74023 * 18 8 7 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 24 24 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 26 26 H 0.96698 * 113.99401 * 59.99882 * 4 2 1 27 27 H 1.08996 * 109.46945 * 304.99450 * 5 2 1 28 28 H 1.09000 * 109.47314 * 64.99572 * 5 2 1 29 29 H 1.07996 * 126.12604 * 359.95649 * 7 6 5 30 30 H 1.09003 * 109.47354 * 209.99668 * 9 8 7 31 31 H 1.08996 * 109.47849 * 330.00389 * 9 8 7 32 32 H 0.96999 * 120.00171 * 180.02562 * 13 12 10 33 33 H 1.07996 * 125.89662 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7214 1.2492 6 7 3.5001 -0.6180 1.3110 7 6 4.2186 -0.1323 2.3448 8 6 5.5273 -0.2094 2.0097 9 6 6.6889 0.2233 2.8668 10 6 7.1441 -0.9344 3.7175 11 1 6.6422 -1.8880 3.6450 12 6 8.2014 -0.7763 4.5883 13 7 8.8129 0.3848 4.6762 14 14 8.7652 -2.2111 5.6432 15 1 9.8035 -2.9832 4.9146 16 1 9.3325 -1.6970 6.9158 17 1 7.6078 -3.0935 5.9380 18 6 5.6115 -0.7605 0.7270 19 7 4.3971 -1.0106 0.3092 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6768 1.9562 0.8900 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.7210 -0.2701 -1.9979 27 1 1.6055 -0.2618 2.1370 28 1 1.7516 -1.7716 1.2056 29 1 3.8204 0.2497 3.2732 30 1 7.5098 0.5498 2.2284 31 1 6.3790 1.0469 3.5100 32 1 9.5569 0.4960 5.2886 33 1 6.5218 -0.9505 0.1779 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056197.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:16 Heat of formation + Delta-G solvation = -6.280918 kcal Electronic energy + Delta-G solvation = -15274.244544 eV Core-core repulsion = 12721.600022 eV Total energy + Delta-G solvation = -2552.644522 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.95051 -39.09695 -35.48407 -34.39205 -32.53974 -31.92423 -28.98334 -28.28135 -26.98503 -24.58450 -22.38905 -21.21847 -20.45339 -18.42971 -17.92782 -17.27378 -16.66147 -16.41547 -15.49205 -15.03106 -14.56025 -14.40845 -14.18176 -14.05925 -13.83093 -13.24371 -13.07013 -13.00436 -12.73273 -12.61856 -12.56467 -12.45273 -11.99142 -11.72621 -11.45933 -11.12160 -10.89937 -10.51662 -10.08014 -8.99121 -8.10369 -6.23759 1.15078 1.42201 1.43486 1.54384 1.81340 2.12371 2.48688 3.17941 3.27290 3.54649 3.91699 3.95211 4.11483 4.22346 4.42536 4.54872 4.67567 4.74638 4.88614 4.91502 4.96373 5.06161 5.17677 5.25612 5.33943 5.44986 5.81207 5.84216 5.93617 6.30149 6.40063 6.89090 6.94417 6.98986 7.44253 8.96931 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.057013 B = 0.005585 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.999795 B = 5011.989682 C = 5062.066962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 C -0.172 4.172 4 O -0.564 6.564 5 C 0.135 3.865 6 N -0.367 5.367 7 C 0.034 3.966 8 C -0.217 4.217 9 C 0.097 3.903 10 C -0.522 4.522 11 H 0.048 0.952 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.961 3.039 15 H -0.275 1.275 16 H -0.279 1.279 17 H -0.268 1.268 18 C 0.018 3.982 19 N -0.291 5.291 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.384 0.616 27 H 0.136 0.864 28 H 0.084 0.916 29 H 0.187 0.813 30 H -0.002 1.002 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.208 0.879 -7.524 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.077 3.923 3 C -0.230 4.230 4 O -0.371 6.371 5 C 0.014 3.986 6 N -0.151 5.151 7 C -0.111 4.111 8 C -0.228 4.228 9 C 0.059 3.941 10 C -0.560 4.560 11 H 0.066 0.934 12 C -0.193 4.193 13 N -0.573 5.573 14 Si 0.786 3.214 15 H -0.200 1.200 16 H -0.204 1.204 17 H -0.193 1.193 18 C -0.167 4.167 19 N -0.113 5.113 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.232 0.768 27 H 0.154 0.846 28 H 0.102 0.898 29 H 0.204 0.796 30 H 0.016 0.984 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -18.688 0.113 -7.941 20.306 hybrid contribution 1.150 0.184 0.847 1.440 sum -17.538 0.296 -7.094 18.921 Atomic orbital electron populations 1.22378 0.92078 1.03556 1.04466 1.21478 0.94231 0.90927 0.85687 1.22407 1.00600 0.96359 1.03612 1.86745 1.77711 1.56626 1.16007 1.22129 0.73706 1.02896 0.99819 1.48508 1.06572 1.48413 1.11573 1.22441 0.91635 1.02387 0.94615 1.20598 0.95437 1.09918 0.96892 1.17325 0.89830 0.94874 0.92087 1.21476 1.15223 0.97584 1.21753 0.93389 1.25872 0.96523 0.98431 0.98484 1.70081 1.23305 1.25183 1.38681 0.85505 0.78520 0.79242 0.78098 1.20048 1.20428 1.19282 1.23909 0.96289 1.00644 0.95842 1.77333 0.98658 1.22404 1.12874 0.90397 0.89735 0.91407 0.90509 0.95220 0.90682 0.76792 0.84621 0.89794 0.79571 0.98411 0.97911 0.92741 0.80625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 8.82 71.98 0.63 -1.35 16 2 C 0.12 2.34 1.15 -10.79 -0.01 2.33 16 3 C -0.17 -3.59 8.60 71.98 0.62 -2.97 16 4 O -0.56 -13.78 12.02 -148.98 -1.79 -15.57 16 5 C 0.13 3.19 5.71 86.38 0.49 3.68 16 6 N -0.37 -12.65 2.70 -348.05 -0.94 -13.59 16 7 C 0.03 1.29 11.36 83.54 0.95 2.24 16 8 C -0.22 -10.07 5.29 -20.15 -0.11 -10.17 16 9 C 0.10 5.33 5.46 29.10 0.16 5.49 16 10 C -0.52 -30.54 9.09 25.60 0.23 -30.31 16 11 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 14 Si 0.96 45.14 29.54 68.60 2.03 47.16 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 C 0.02 0.80 11.96 85.23 1.02 1.82 16 19 N -0.29 -11.81 11.57 -57.03 -0.66 -12.47 16 20 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 0.87 7.47 -2.39 -0.02 0.85 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.38 6.21 9.04 -74.06 -0.67 5.54 16 27 H 0.14 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.19 6.03 8.06 -2.91 -0.02 6.01 16 30 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.18 7.19 8.06 -2.91 -0.02 7.17 16 Total: -1.00 -73.03 285.22 3.79 -69.24 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.42 Total: 10.32 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.45 Total: -28.52 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.31 Total: -82.63 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -1.79 Total: -15.57 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.03 3.79 -69.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056197.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.957 kcal (2) G-P(sol) polarization free energy of solvation -73.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds