Wall clock time and date at job start Sun Mar 29 2020 21:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47513 * 2 1 4 4 N 1.46900 * 109.46926 * 119.99952 * 2 1 3 5 5 C 1.52997 * 109.47538 * 239.99602 * 2 1 3 6 6 N 1.46491 * 109.47736 * 175.00031 * 5 2 1 7 7 C 1.35317 * 125.87001 * 124.98072 * 6 5 2 8 8 C 1.35349 * 106.17446 * 180.02562 * 7 6 5 9 9 C 1.50702 * 126.75092 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47245 * 124.99958 * 9 8 7 11 11 C 1.50702 * 109.47245 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99653 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00489 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99918 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00425 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46745 * 89.99931 * 15 13 11 17 17 H 1.48501 * 109.47396 * 210.00183 * 15 13 11 18 18 H 1.48497 * 109.47093 * 330.00341 * 15 13 11 19 19 N 1.33777 * 106.49799 * 0.02562 * 8 7 6 20 20 N 1.28634 * 108.88349 * 359.97438 * 19 8 7 21 21 H 1.08997 * 109.46993 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47008 * 300.00404 * 1 2 3 23 23 H 1.08996 * 109.47142 * 60.00455 * 1 2 3 24 24 H 1.00899 * 111.00353 * 60.00312 * 4 2 1 25 25 H 1.00908 * 111.00140 * 183.95579 * 4 2 1 26 26 H 1.09006 * 109.47253 * 54.99642 * 5 2 1 27 27 H 1.09006 * 109.47120 * 295.00759 * 5 2 1 28 28 H 1.07995 * 126.91332 * 0.07575 * 7 6 5 29 29 H 1.09009 * 109.46777 * 244.99981 * 9 8 7 30 30 H 1.09001 * 109.47201 * 4.99104 * 9 8 7 31 31 H 1.08996 * 109.47333 * 299.99421 * 10 9 8 32 32 H 1.09001 * 109.47552 * 60.00230 * 10 9 8 33 33 H 0.96998 * 120.00073 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0401 -0.7213 -1.2491 6 7 3.5001 -0.6180 -1.3109 7 6 4.3648 -1.6541 -1.4092 8 6 5.6038 -1.1100 -1.4353 9 6 6.9121 -1.8509 -1.5378 10 6 7.7094 -1.3157 -2.7289 11 6 9.0179 -2.0562 -2.8310 12 1 9.2571 -2.8309 -2.1174 13 6 9.9098 -1.7449 -3.8353 14 7 9.6183 -0.8020 -4.7045 15 14 11.5321 -2.6624 -3.9614 16 1 11.3588 -3.8576 -4.8255 17 1 12.5612 -1.7694 -4.5521 18 1 11.9658 -3.0895 -2.6070 19 7 5.4387 0.2150 -1.3523 20 7 4.1808 0.4740 -1.2801 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.6962 -1.6479 1.2228 25 1 3.0262 -0.6501 1.2560 26 1 1.6055 -0.2619 -2.1370 27 1 1.7516 -1.7716 -1.2055 28 1 4.1163 -2.7040 -1.4579 29 1 7.4850 -1.7050 -0.6220 30 1 6.7175 -2.9141 -1.6790 31 1 7.1366 -1.4616 -3.6446 32 1 7.9041 -0.2526 -2.5876 33 1 10.2459 -0.5827 -5.4109 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254162337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:39 Heat of formation + Delta-G solvation = 79.532878 kcal Electronic energy + Delta-G solvation = -14880.698899 eV Core-core repulsion = 12364.068294 eV Total energy + Delta-G solvation = -2516.630605 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.92027 -37.39040 -34.35323 -33.05607 -31.88196 -29.70216 -29.24369 -27.17204 -25.23454 -22.43126 -21.76334 -21.12902 -19.69922 -17.33548 -16.42020 -16.30839 -16.05558 -14.99971 -14.51022 -14.36983 -14.11227 -13.47637 -13.02776 -12.77202 -12.36677 -12.30717 -11.98260 -11.65674 -11.33829 -11.01063 -10.90631 -10.63313 -10.47418 -10.08000 -9.76483 -9.49259 -9.10520 -9.06087 -8.54148 -8.28209 -5.93459 -3.96731 1.87326 2.46927 3.04895 3.35569 3.41864 3.45284 4.07846 4.14262 4.50161 4.53639 4.65090 4.83018 4.96735 5.05763 5.33374 5.36390 5.42013 5.56052 5.65311 5.74725 5.91478 6.49489 6.53739 6.69703 6.71488 6.82079 7.03367 7.08926 7.75337 7.91564 8.08825 8.45643 8.92444 9.10861 9.66742 11.17791 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.083290 B = 0.004576 C = 0.004490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.094605 B = 6117.741065 C = 6234.190918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.076 3.924 3 H 0.100 0.900 4 N -0.839 5.839 5 C 0.080 3.920 6 N -0.302 5.302 7 C -0.075 4.075 8 C 0.013 3.987 9 C -0.034 4.034 10 C 0.029 3.971 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 N -0.256 5.256 20 N -0.095 5.095 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.339 0.661 25 H 0.347 0.653 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.183 0.817 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.013 0.987 32 H 0.027 0.973 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.314 -2.918 8.063 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.118 0.882 4 N -0.368 5.368 5 C -0.044 4.044 6 N -0.097 5.097 7 C -0.224 4.224 8 C -0.124 4.124 9 C -0.073 4.073 10 C -0.008 4.008 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 N -0.123 5.123 20 N -0.074 5.074 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.151 0.849 25 H 0.160 0.840 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.200 0.800 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.045 0.955 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.756 -0.735 8.416 20.571 hybrid contribution 1.248 -2.379 -1.119 2.910 sum -17.508 -3.114 7.297 19.221 Atomic orbital electron populations 1.21751 0.92788 1.02432 1.03048 1.21832 0.96283 0.99594 0.85973 0.88206 1.58888 1.17133 1.21086 1.39735 1.23020 0.74709 1.03754 1.02910 1.47252 1.08297 1.05463 1.48662 1.23373 0.90026 0.95519 1.13469 1.22657 0.96687 0.90678 1.02392 1.20212 0.88188 0.96733 1.02193 1.19032 0.93558 0.97243 0.90989 1.21238 1.02334 1.19699 1.12788 0.92552 1.25022 0.98371 0.95215 0.95805 1.69989 1.36294 1.30620 1.16322 0.86598 0.83628 0.79562 0.78217 1.20761 1.21251 1.19827 1.75137 1.06184 1.14938 1.16043 1.78241 0.99249 1.09831 1.20118 0.92424 0.90886 0.91601 0.84863 0.84011 0.88292 0.88185 0.79979 0.91230 0.91574 0.96866 0.95460 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.49 37.16 0.35 -0.50 16 2 C 0.08 0.64 3.46 -67.71 -0.23 0.41 16 3 H 0.10 1.06 8.00 -51.93 -0.42 0.65 16 4 N -0.84 -7.53 9.23 -4.67 -0.04 -7.57 16 5 C 0.08 0.70 6.05 -4.05 -0.02 0.67 16 6 N -0.30 -4.18 3.04 -61.27 -0.19 -4.36 16 7 C -0.07 -1.11 11.49 -17.04 -0.20 -1.30 16 8 C 0.01 0.26 6.50 -82.77 -0.54 -0.28 16 9 C -0.03 -0.72 5.73 -27.89 -0.16 -0.88 16 10 C 0.03 0.79 4.95 -27.89 -0.14 0.65 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 15 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.26 -5.45 12.40 33.29 0.41 -5.04 16 20 N -0.10 -1.72 12.82 60.35 0.77 -0.95 16 21 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.34 2.36 9.00 -39.29 -0.35 2.00 16 25 H 0.35 3.77 8.68 -39.29 -0.34 3.43 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 30 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 286.85 15.07 4.32 4.32 Total: -1.00 -33.91 286.85 -5.23 -39.14 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.87 Total: -0.53 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -1.35 Total: -14.95 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 1.69 Total: -44.84 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.91 -5.23 -39.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254162337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.672 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds