Wall clock time and date at job start Sun Mar 29 2020 21:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47515 * 2 1 4 4 H 1.09003 * 109.46876 * 55.40329 * 3 2 1 5 5 C 1.50699 * 109.47365 * 175.40521 * 3 2 1 6 6 H 1.08001 * 120.00012 * 119.99772 * 5 3 2 7 7 C 1.37883 * 119.99836 * 299.99992 * 5 3 2 8 8 N 1.31515 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47204 * 89.99835 * 9 7 5 11 11 H 1.48500 * 109.47055 * 210.00035 * 9 7 5 12 12 H 1.48504 * 109.47068 * 329.99795 * 9 7 5 13 13 N 1.46903 * 109.47140 * 295.40285 * 3 2 1 14 14 C 1.46903 * 111.00089 * 151.91795 * 13 3 2 15 15 H 1.09009 * 109.47172 * 327.60187 * 14 13 3 16 16 C 1.53001 * 109.46849 * 87.59318 * 14 13 3 17 17 C 1.50695 * 109.47620 * 207.59639 * 14 13 3 18 18 C 1.35450 * 126.77891 * 139.99959 * 17 14 13 19 19 C 1.41374 * 103.98396 * 179.97438 * 18 17 14 20 20 N 1.30167 * 106.39983 * 0.02562 * 19 18 17 21 21 O 1.20925 * 111.60434 * 359.71916 * 20 19 18 22 22 H 1.09000 * 109.46695 * 57.71088 * 1 2 3 23 23 H 1.09001 * 109.47234 * 177.71122 * 1 2 3 24 24 H 1.09001 * 109.47163 * 297.71683 * 1 2 3 25 25 H 1.09000 * 109.46774 * 120.00482 * 2 1 3 26 26 H 1.09000 * 109.47272 * 239.99573 * 2 1 3 27 27 H 0.97000 * 119.99573 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99575 * 27.97605 * 13 3 2 29 29 H 1.09002 * 109.47326 * 180.02562 * 16 14 13 30 30 H 1.08998 * 109.47342 * 300.00696 * 16 14 13 31 31 H 1.08998 * 109.47157 * 60.00131 * 16 14 13 32 32 H 1.07998 * 128.00212 * 359.97438 * 18 17 14 33 33 H 1.08005 * 126.79782 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6111 1.9795 0.8460 5 6 3.5428 1.4439 0.1138 6 1 4.1429 1.8902 -0.6653 7 6 4.1515 0.8753 1.2126 8 7 3.4207 0.3313 2.1611 9 14 6.0141 0.8778 1.3541 10 1 6.4556 2.1090 2.0572 11 1 6.4538 -0.3151 2.1215 12 1 6.6138 0.8413 -0.0040 13 7 1.6432 2.1021 -1.2511 14 6 1.4946 3.5508 -1.0582 15 1 1.1451 3.7485 -0.0447 16 6 2.8459 4.2353 -1.2741 17 6 0.4947 4.0896 -2.0485 18 6 -0.4517 5.0302 -1.8152 19 6 -1.1100 5.1682 -3.0587 20 7 -0.5272 4.3404 -3.8769 21 8 0.3696 3.7364 -3.3354 22 1 -0.3633 0.5490 -0.8688 23 1 -0.3634 -1.0268 -0.0410 24 1 -0.3633 0.4780 0.9097 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 3.8489 -0.0683 2.9343 28 1 0.7955 1.6978 -1.6199 29 1 2.7358 5.3102 -1.1305 30 1 3.5692 3.8455 -0.5579 31 1 3.1955 4.0376 -2.2874 32 1 -0.6559 5.5535 -0.8928 33 1 -1.9339 5.8289 -3.2847 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:19 Heat of formation + Delta-G solvation = 56.177178 kcal Electronic energy + Delta-G solvation = -15699.001369 eV Core-core repulsion = 13149.065234 eV Total energy + Delta-G solvation = -2549.936135 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.67110 -37.07694 -34.01750 -33.43863 -31.78662 -30.38852 -28.31655 -26.54195 -23.33692 -23.19509 -22.51328 -20.41718 -19.56139 -17.25444 -17.01241 -16.35287 -15.22131 -14.89839 -14.16825 -13.87352 -13.58610 -13.18117 -12.70269 -12.51057 -12.22838 -11.53864 -11.40731 -11.23471 -11.18350 -10.92065 -10.78564 -10.56100 -10.28569 -9.93850 -9.75072 -9.66922 -9.15951 -9.04085 -8.37347 -7.39961 -5.99979 -4.03562 1.70881 2.44401 3.30814 3.35893 3.38393 3.42881 4.41759 4.50932 4.69002 5.14608 5.29217 5.32473 5.63455 5.67905 5.88623 5.90465 6.12724 6.14614 6.17168 6.31153 6.37497 6.57199 6.80455 6.95811 7.01737 7.11332 7.39932 7.73098 7.88634 8.16853 8.32608 8.47081 8.64937 9.03856 9.61134 11.05582 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.035820 B = 0.007754 C = 0.006826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.500231 B = 3609.958838 C = 4100.809574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.493 4.493 6 H 0.067 0.933 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.678 5.678 14 C 0.171 3.829 15 H 0.071 0.929 16 C -0.139 4.139 17 C -0.007 4.007 18 C -0.251 4.251 19 C -0.015 4.015 20 N -0.378 5.378 21 O 0.108 5.892 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.042 0.958 25 H 0.101 0.899 26 H 0.043 0.957 27 H 0.260 0.740 28 H 0.324 0.676 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.168 0.832 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 6.871 -4.196 10.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.024 0.976 5 C -0.532 4.532 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.311 5.311 14 C 0.060 3.940 15 H 0.089 0.911 16 C -0.197 4.197 17 C -0.071 4.071 18 C -0.273 4.273 19 C -0.194 4.194 20 N -0.081 5.081 21 O 0.043 5.957 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.143 0.857 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.759 6.495 -5.562 10.310 hybrid contribution -0.119 0.457 1.478 1.552 sum -5.878 6.952 -4.084 9.978 Atomic orbital electron populations 1.21899 0.99655 0.99690 0.99658 1.21804 0.91161 1.00299 1.03345 1.19294 0.95737 0.90080 0.83754 0.97602 1.21262 0.90923 1.36271 1.04704 0.91466 1.24970 0.98123 0.95568 0.95876 1.69868 1.34835 1.39143 1.09758 0.86566 0.85801 0.77359 0.78106 1.20873 1.21418 1.19826 1.60894 1.37286 0.99584 1.33324 1.20227 0.91314 0.90969 0.91469 0.91144 1.21919 0.96486 0.97506 1.03776 1.25269 0.98868 0.97019 0.85992 1.22563 0.99866 1.04150 1.00721 1.24971 1.02868 1.00753 0.90786 1.73879 1.02088 1.09390 1.22720 1.84864 1.39739 1.50132 1.20988 0.94723 0.94264 0.93849 0.88052 0.93826 0.93052 0.85742 0.93903 0.88961 0.92313 0.81414 0.79684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.78 37.16 0.36 -2.51 16 2 C -0.13 -2.90 5.34 -26.73 -0.14 -3.04 16 3 C 0.22 5.12 2.04 -68.87 -0.14 4.98 16 4 H 0.01 0.16 7.34 -51.93 -0.38 -0.22 16 5 C -0.49 -12.77 7.44 -34.44 -0.26 -13.02 16 6 H 0.07 1.76 6.88 -52.49 -0.36 1.40 16 7 C 0.06 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.55 11.29 55.43 0.63 -23.93 16 9 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.76 6.16 -102.17 -0.63 -14.39 16 14 C 0.17 3.04 3.11 -68.87 -0.21 2.82 16 15 H 0.07 1.26 7.35 -51.92 -0.38 0.88 16 16 C -0.14 -2.40 9.09 37.16 0.34 -2.07 16 17 C -0.01 -0.11 5.95 -35.31 -0.21 -0.32 16 18 C -0.25 -3.41 11.09 -39.38 -0.44 -3.85 16 19 C -0.02 -0.21 12.17 -17.06 -0.21 -0.41 16 20 N -0.38 -6.15 12.07 30.35 0.37 -5.79 16 21 O 0.11 1.87 11.20 17.18 0.19 2.06 16 22 H 0.03 0.60 6.36 -51.93 -0.33 0.27 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.10 2.59 5.96 -51.93 -0.31 2.28 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 28 H 0.32 6.28 5.99 -39.29 -0.24 6.04 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.80 6.10 -51.93 -0.32 1.48 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.19 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 273.98 15.07 4.13 4.13 Total: -1.00 -27.43 273.98 -5.75 -33.17 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.41 Total: 5.06 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.00 Total: -16.05 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.36 Total: -44.11 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.19 Total: 2.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.43 -5.75 -33.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.351 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds