Wall clock time and date at job start Sun Mar 29 2020 21:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46624 * 2 1 4 4 H 1.08998 * 109.47038 * 302.97379 * 3 2 1 5 5 C 1.50704 * 109.47163 * 182.97848 * 3 2 1 6 6 H 1.08001 * 120.00041 * 240.00015 * 5 3 2 7 7 C 1.37874 * 119.99917 * 59.99687 * 5 3 2 8 8 N 1.31517 * 120.00156 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 120.00110 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46936 * 59.99816 * 9 7 5 11 11 H 1.48497 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46519 * 299.99942 * 9 7 5 13 13 N 1.46902 * 109.47336 * 62.97909 * 3 2 1 14 14 C 1.46901 * 110.99686 * 210.60310 * 13 3 2 15 15 H 1.09001 * 109.47525 * 31.98758 * 14 13 3 16 16 C 1.52998 * 109.47344 * 271.98132 * 14 13 3 17 17 C 1.50707 * 109.46705 * 151.98367 * 14 13 3 18 18 C 1.35457 * 126.77399 * 219.71215 * 17 14 13 19 19 C 1.41383 * 103.98036 * 179.90834 * 18 17 14 20 20 N 1.30172 * 106.39735 * 0.35677 * 19 18 17 21 21 O 1.20918 * 111.60578 * 359.77174 * 20 19 18 22 22 H 1.09002 * 109.47381 * 54.87927 * 1 2 3 23 23 H 1.09004 * 109.46724 * 174.86848 * 1 2 3 24 24 H 1.08993 * 109.47720 * 294.87381 * 1 2 3 25 25 H 1.09000 * 109.47569 * 239.99595 * 2 1 3 26 26 H 1.08999 * 109.47082 * 119.99198 * 2 1 3 27 27 H 0.96999 * 120.00368 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00260 * 86.65378 * 13 3 2 29 29 H 1.08999 * 109.47140 * 180.02562 * 16 14 13 30 30 H 1.08995 * 109.47202 * 300.00047 * 16 14 13 31 31 H 1.09000 * 109.46918 * 60.00486 * 16 14 13 32 32 H 1.08001 * 128.00753 * 359.97438 * 18 17 14 33 33 H 1.08001 * 126.79736 * 180.15860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6336 1.9715 -0.8621 5 6 3.5451 1.4433 -0.0738 6 1 4.1243 1.8972 0.7167 7 6 4.1828 0.8646 -1.1506 8 7 3.4775 0.3123 -2.1135 9 14 6.0486 0.8649 -1.2418 10 1 6.6017 0.1439 -0.0673 11 1 6.4834 0.1857 -2.4887 12 1 6.5439 2.2649 -1.2415 13 7 1.6098 2.1140 1.2338 14 6 1.4087 3.5515 1.0081 15 1 1.0663 3.7146 -0.0138 16 6 2.7295 4.2919 1.2277 17 6 0.3748 4.0717 1.9733 18 6 -0.6002 4.9741 1.7088 19 6 -1.2845 5.1080 2.9387 20 7 -0.6818 4.3207 3.7822 21 8 0.2419 3.7370 3.2644 22 1 -0.3634 0.5912 -0.8406 23 1 -0.3633 -1.0236 -0.0919 24 1 -0.3634 0.4322 0.9322 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.9260 -0.0945 -2.8712 28 1 2.2687 1.9540 1.9811 29 1 2.5802 5.3587 1.0607 30 1 3.0718 4.1290 2.2496 31 1 3.4773 3.9157 0.5296 32 1 -0.8075 5.4745 0.7744 33 1 -2.1363 5.7409 3.1395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164153.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:20 Heat of formation + Delta-G solvation = 34.623841 kcal Electronic energy + Delta-G solvation = -15692.553213 eV Core-core repulsion = 13141.682455 eV Total energy + Delta-G solvation = -2550.870758 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.70443 -38.64495 -35.54793 -34.58991 -33.51356 -31.86257 -29.78173 -27.99185 -24.81168 -24.47175 -23.97277 -21.69219 -21.39872 -18.69683 -18.34440 -17.94225 -16.82995 -16.19051 -15.77834 -15.26627 -14.77099 -14.50590 -14.14236 -13.95625 -13.73874 -13.19802 -13.02053 -12.98386 -12.63442 -12.55183 -12.46183 -12.02121 -11.96592 -11.48230 -11.40090 -11.31068 -10.96555 -10.41473 -10.20447 -9.10596 -8.01987 -6.20793 0.65178 1.43543 1.45923 1.48507 1.51526 2.30949 2.44646 3.19699 3.43237 3.60902 3.98424 4.18219 4.35768 4.38206 4.64078 4.64750 4.74533 4.78256 4.92315 5.00650 5.01571 5.20657 5.25930 5.38505 5.43528 5.57239 5.66037 5.79945 6.11734 6.20816 6.39093 6.77219 7.03234 7.41044 7.49799 8.96210 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.036258 B = 0.007712 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.052583 B = 3629.863288 C = 4103.287463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.227 3.773 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.060 0.940 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.169 3.831 15 H 0.100 0.900 16 C -0.169 4.169 17 C 0.001 3.999 18 C -0.246 4.246 19 C -0.003 4.003 20 N -0.408 5.408 21 O 0.077 5.923 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.337 0.663 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.194 0.806 33 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 8.384 4.553 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.119 3.881 4 H 0.028 0.972 5 C -0.590 4.590 6 H 0.078 0.922 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.309 5.309 14 C 0.057 3.943 15 H 0.118 0.882 16 C -0.228 4.228 17 C -0.064 4.064 18 C -0.268 4.268 19 C -0.181 4.181 20 N -0.116 5.116 21 O 0.017 5.983 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.211 0.789 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.244 7.804 5.588 11.450 hybrid contribution 1.858 0.363 -1.148 2.214 sum -4.386 8.167 4.439 10.278 Atomic orbital electron populations 1.21546 0.96779 0.99423 1.00401 1.21397 0.94020 0.98796 1.00069 1.18983 0.91817 0.91204 0.86127 0.97248 1.22140 0.93482 1.37232 1.06157 0.92191 1.25594 1.01661 0.94906 0.95572 1.69990 1.36464 1.38379 1.10220 0.85821 0.81664 0.78267 0.77099 1.20131 1.21468 1.19716 1.60774 1.52729 1.07727 1.09690 1.20016 0.91018 0.89097 0.94195 0.88219 1.22445 0.96960 1.00947 1.02398 1.25003 0.99565 0.96671 0.85169 1.22892 0.97873 1.04154 1.01904 1.25580 1.02758 0.99927 0.89858 1.73854 1.01847 1.11558 1.24354 1.84783 1.39078 1.52240 1.22238 0.94707 0.94022 0.93083 0.91865 0.95545 0.92999 0.84501 0.90940 0.92478 0.91384 0.78862 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.72 71.98 0.70 -4.26 16 2 C -0.10 -4.85 5.44 30.59 0.17 -4.68 16 3 C 0.23 10.51 2.02 44.17 0.09 10.60 16 4 H 0.01 0.49 7.29 -2.39 -0.02 0.47 16 5 C -0.55 -27.56 7.25 25.60 0.19 -27.38 16 6 H 0.06 2.92 6.99 -2.91 -0.02 2.90 16 7 C 0.02 1.18 5.30 84.65 0.45 1.63 16 8 N -0.91 -49.90 11.30 21.45 0.24 -49.66 16 9 Si 0.94 41.49 29.54 68.60 2.03 43.52 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 N -0.68 -26.64 5.50 -477.14 -2.63 -29.26 16 14 C 0.17 5.64 3.08 44.17 0.14 5.78 16 15 H 0.10 3.39 7.31 -2.39 -0.02 3.38 16 16 C -0.17 -5.24 8.88 71.98 0.64 -4.60 16 17 C 0.00 0.02 6.33 25.04 0.16 0.18 16 18 C -0.25 -6.19 11.09 22.40 0.25 -5.95 16 19 C 0.00 -0.07 12.17 85.71 1.04 0.97 16 20 N -0.41 -12.99 12.07 -59.27 -0.72 -13.70 16 21 O 0.08 2.63 11.20 71.66 0.80 3.43 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.05 1.98 7.84 -2.39 -0.02 1.96 16 25 H 0.06 3.32 6.00 -2.39 -0.01 3.30 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 28 H 0.34 13.33 7.97 -89.69 -0.71 12.61 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.72 8.12 -2.39 -0.02 1.70 16 31 H 0.07 2.44 6.36 -2.39 -0.02 2.42 16 32 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.22 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -56.74 277.10 3.93 -52.81 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.39 Total: 20.57 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.82 Total: -27.70 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -3.10 Total: -92.62 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.80 Total: 3.43 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -56.74 3.93 -52.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164153.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.432 kcal (2) G-P(sol) polarization free energy of solvation -56.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds