Wall clock time and date at job start Sun Mar 29 2020 21:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46887 * 2 1 4 4 H 1.08999 * 109.47430 * 54.70937 * 3 2 1 5 5 C 1.50700 * 109.46742 * 174.70500 * 3 2 1 6 6 H 1.08005 * 120.00270 * 114.57775 * 5 3 2 7 7 C 1.37879 * 120.00076 * 294.58054 * 5 3 2 8 8 N 1.31512 * 119.99987 * 350.74652 * 7 5 3 9 9 Si 1.86804 * 120.00031 * 170.75448 * 7 5 3 10 10 H 1.48494 * 109.47488 * 89.99653 * 9 7 5 11 11 H 1.48506 * 109.46632 * 209.99788 * 9 7 5 12 12 H 1.48500 * 109.47191 * 329.99218 * 9 7 5 13 13 N 1.46499 * 109.47287 * 294.70256 * 3 2 1 14 14 C 1.35493 * 126.98087 * 299.68635 * 13 3 2 15 15 C 1.50693 * 126.34818 * 359.97438 * 14 13 3 16 16 N 1.30524 * 107.30771 * 179.83579 * 14 13 3 17 17 N 1.28597 * 109.67068 * 0.44210 * 16 14 13 18 18 C 1.30529 * 109.67188 * 359.72134 * 17 16 14 19 19 C 1.50702 * 126.34272 * 180.02562 * 18 17 16 20 20 N 1.46893 * 109.47041 * 269.95391 * 19 18 17 21 21 H 1.09002 * 109.47368 * 295.42791 * 1 2 3 22 22 H 1.09000 * 109.47330 * 175.42495 * 1 2 3 23 23 H 1.09006 * 109.47418 * 55.42584 * 1 2 3 24 24 H 1.08997 * 109.47023 * 120.00334 * 2 1 3 25 25 H 1.09002 * 109.46698 * 240.00567 * 2 1 3 26 26 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 27 27 H 1.09000 * 109.47547 * 89.99872 * 15 14 13 28 28 H 1.09006 * 109.47367 * 209.99432 * 15 14 13 29 29 H 1.09008 * 109.47169 * 329.99610 * 15 14 13 30 30 H 1.09005 * 109.47169 * 29.96082 * 19 18 17 31 31 H 1.09000 * 109.46767 * 149.95335 * 19 18 17 32 32 H 1.00901 * 111.00073 * 179.97438 * 20 19 18 33 33 H 1.00891 * 111.00364 * 303.96050 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6013 1.9830 0.8388 5 6 3.5412 1.4445 0.1311 6 1 4.1538 1.8079 -0.6808 7 6 4.1329 0.9824 1.2876 8 7 3.3940 0.7115 2.3413 9 14 5.9839 0.7412 1.3578 10 1 6.6292 1.9948 1.8237 11 1 6.3041 -0.3605 2.3008 12 1 6.4900 0.3971 0.0047 13 7 1.6585 2.0954 -1.2548 14 6 2.0129 1.7223 -2.5082 15 6 2.8815 0.5479 -2.8785 16 7 1.4599 2.5668 -3.3357 17 7 0.7926 3.4457 -2.6755 18 6 0.8846 3.1983 -1.3972 19 6 0.2476 3.9921 -0.2858 20 7 1.1683 5.0505 0.1499 21 1 -0.3634 0.4413 0.9281 22 1 -0.3634 -1.0244 -0.0820 23 1 -0.3634 0.5832 -0.8462 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.8102 0.3860 3.1548 27 1 2.2575 -0.3337 -3.0253 28 1 3.4191 0.7699 -3.8004 29 1 3.5963 0.3578 -2.0778 30 1 -0.6786 4.4411 -0.6447 31 1 0.0297 3.3317 0.5536 32 1 0.7637 5.5976 0.8950 33 1 2.0583 4.6642 0.4268 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165194.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:56 Heat of formation + Delta-G solvation = 57.722914 kcal Electronic energy + Delta-G solvation = -16249.299724 eV Core-core repulsion = 13731.723368 eV Total energy + Delta-G solvation = -2517.576356 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.26331 -36.06371 -34.56638 -32.59431 -31.36548 -31.04630 -27.57164 -27.16439 -24.52268 -23.66425 -21.51019 -20.24195 -19.28628 -16.97291 -16.15912 -15.59584 -15.19279 -14.56246 -14.17322 -13.52167 -13.37037 -13.25500 -13.04997 -12.29022 -12.15718 -12.01484 -11.75463 -11.71311 -11.28735 -11.07427 -10.80592 -10.57171 -10.30107 -10.10189 -9.93275 -9.49409 -8.86003 -8.76726 -8.48938 -8.15462 -6.49647 -4.56700 2.69388 3.07624 3.16195 3.19656 3.57465 3.64439 4.11335 4.83032 4.92494 5.07704 5.34038 5.45827 5.72096 5.77741 5.84745 5.90348 6.04446 6.07172 6.28550 6.39723 6.51586 6.58064 6.62372 6.82157 7.01475 7.14064 7.30900 7.33258 7.47173 7.69059 7.73590 7.90603 8.48773 9.10975 9.61360 10.57596 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.011169 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.541365 B = 2506.297792 C = 2676.879416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.260 3.740 4 H 0.063 0.937 5 C -0.542 4.542 6 H 0.069 0.931 7 C 0.076 3.924 8 N -0.880 5.880 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 N -0.429 5.429 14 C 0.183 3.817 15 C -0.070 4.070 16 N -0.324 5.324 17 N -0.299 5.299 18 C 0.157 3.843 19 C 0.158 3.842 20 N -0.841 5.841 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.269 0.731 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.343 0.657 33 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 -0.960 -0.088 2.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.159 3.841 4 H 0.081 0.919 5 C -0.580 4.580 6 H 0.087 0.913 7 C -0.130 4.130 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.117 5.117 14 C -0.085 4.085 15 C -0.129 4.129 16 N -0.167 5.167 17 N -0.142 5.142 18 C -0.112 4.112 19 C 0.025 3.975 20 N -0.373 5.373 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.102 -0.123 -1.854 3.616 hybrid contribution 1.313 -1.275 2.385 3.006 sum -1.789 -1.398 0.531 2.332 Atomic orbital electron populations 1.21841 0.98171 1.00294 1.00572 1.21939 0.92969 0.98417 1.03179 1.19417 0.96627 0.90134 0.77908 0.91895 1.21143 0.89319 1.45142 1.02371 0.91315 1.24876 0.99103 0.94342 0.94633 1.69919 1.36207 1.43117 1.02360 0.86425 0.84099 0.78234 0.78484 1.20301 1.20771 1.19348 1.46696 1.34351 1.20961 1.09671 1.24441 1.01786 1.00656 0.81663 1.20315 0.97726 0.91578 1.03243 1.74083 1.12344 1.03446 1.26865 1.74012 1.19273 1.19763 1.01118 1.24224 1.00015 0.91005 0.95926 1.19831 0.94932 0.90996 0.91697 1.58633 1.07285 1.26006 1.45402 0.93288 0.93716 0.94276 0.88724 0.92864 0.92078 0.91020 0.90426 0.88311 0.88717 0.93760 0.84424 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.85 37.16 0.37 -2.35 16 2 C -0.13 -2.57 5.28 -26.73 -0.14 -2.71 16 3 C 0.26 5.68 2.07 -69.08 -0.14 5.54 16 4 H 0.06 1.48 6.78 -51.93 -0.35 1.12 16 5 C -0.54 -12.88 7.10 -34.44 -0.24 -13.13 16 6 H 0.07 1.70 7.08 -52.48 -0.37 1.33 16 7 C 0.08 1.81 5.16 -17.82 -0.09 1.71 16 8 N -0.88 -21.67 12.15 55.43 0.67 -20.99 16 9 Si 0.90 19.02 29.55 -169.99 -5.02 13.99 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 13 N -0.43 -9.20 1.98 -104.84 -0.21 -9.41 16 14 C 0.18 3.92 7.44 -154.99 -1.15 2.76 16 15 C -0.07 -1.23 8.72 36.00 0.31 -0.92 16 16 N -0.32 -7.49 12.21 32.79 0.40 -7.09 16 17 N -0.30 -6.90 12.21 32.80 0.40 -6.50 16 18 C 0.16 3.31 7.54 -154.98 -1.17 2.14 16 19 C 0.16 2.72 6.98 -4.98 -0.03 2.69 16 20 N -0.84 -13.69 9.61 -11.41 -0.11 -13.80 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.73 7.64 -51.93 -0.40 0.33 16 24 H 0.09 2.10 6.78 -51.93 -0.35 1.75 16 25 H 0.05 1.04 5.96 -51.93 -0.31 0.73 16 26 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 27 H 0.07 1.13 7.80 -51.93 -0.41 0.72 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.10 1.84 5.83 -51.92 -0.30 1.54 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.04 0.73 7.21 -51.93 -0.37 0.36 16 32 H 0.34 4.40 9.08 -39.29 -0.36 4.04 16 33 H 0.35 6.26 8.98 -39.30 -0.35 5.90 16 LS Contribution 273.22 15.07 4.12 4.12 Total: -1.00 -27.37 273.22 -6.45 -33.82 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.40 Total: 10.13 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.30 Total: -4.27 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 1.16 Total: -57.79 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.37 -6.45 -33.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165194.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.542 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds