Wall clock time and date at job start Sun Mar 29 2020 21:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46901 * 2 1 4 4 C 1.50699 * 109.47248 * 239.99921 * 2 1 3 5 5 H 1.08001 * 120.00049 * 240.00298 * 4 2 1 6 6 C 1.37874 * 119.99921 * 59.99852 * 4 2 1 7 7 N 1.31511 * 120.00139 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99774 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.46928 * 60.00579 * 8 6 4 10 10 H 1.48502 * 109.46542 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47022 * 300.00086 * 8 6 4 12 12 C 1.50703 * 109.47006 * 119.99871 * 2 1 3 13 13 N 1.30271 * 126.28119 * 60.02894 * 12 2 1 14 14 N 1.28668 * 109.38063 * 180.02562 * 13 12 2 15 15 C 1.30274 * 109.38175 * 359.97438 * 14 13 12 16 16 C 1.50703 * 126.28368 * 179.73686 * 15 14 13 17 17 C 1.53000 * 109.46909 * 60.02965 * 16 15 14 18 18 C 1.53003 * 109.47108 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.47207 * 300.02723 * 16 15 14 20 20 O 1.34360 * 126.28092 * 240.02027 * 12 2 1 21 21 H 1.08999 * 109.46901 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46665 * 300.00159 * 1 2 3 23 23 H 1.08993 * 109.47119 * 59.99878 * 1 2 3 24 24 H 0.96996 * 120.00192 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47307 * 60.00084 * 17 16 15 26 26 H 1.08998 * 109.46859 * 180.02562 * 17 16 15 27 27 H 1.09002 * 109.46919 * 299.99512 * 17 16 15 28 28 H 1.09002 * 109.47001 * 59.99980 * 18 16 15 29 29 H 1.08998 * 109.47106 * 179.97438 * 18 16 15 30 30 H 1.08998 * 109.47399 * 300.00093 * 18 16 15 31 31 H 1.09002 * 109.47382 * 60.00022 * 19 16 15 32 32 H 1.08998 * 109.47260 * 180.02562 * 19 16 15 33 33 H 1.08997 * 109.47435 * 299.99913 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8279 -0.4193 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 7 1.7947 -1.9491 1.5565 14 7 2.3807 -2.2175 2.6701 15 6 3.0127 -1.1593 3.0921 16 6 3.8200 -1.0491 4.3598 17 6 4.9655 -2.0628 4.3247 18 6 4.3935 0.3645 4.4780 19 6 2.9209 -1.3370 5.5637 20 8 2.8076 -0.1825 2.1925 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 0.7089 1.1613 -3.4843 25 1 5.6061 -1.8577 3.4670 26 1 5.5491 -1.9834 5.2418 27 1 4.5569 -3.0698 4.2406 28 1 3.5774 1.0867 4.5029 29 1 4.9770 0.4444 5.3951 30 1 5.0341 0.5696 3.6203 31 1 2.5123 -2.3440 5.4796 32 1 3.5047 -1.2568 6.4807 33 1 2.1049 -0.6148 5.5888 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349974684.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:20 Heat of formation + Delta-G solvation = -10.837158 kcal Electronic energy + Delta-G solvation = -15587.104940 eV Core-core repulsion = 13034.262845 eV Total energy + Delta-G solvation = -2552.842095 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.11459 -38.16465 -37.05813 -36.58257 -33.34443 -30.39291 -28.31882 -28.26694 -27.41386 -25.28683 -24.74568 -22.24854 -20.98254 -18.69141 -18.01398 -17.95399 -16.86973 -16.45772 -15.46989 -15.07309 -14.86698 -14.72525 -13.80621 -13.43157 -13.22604 -13.18797 -13.04498 -13.00138 -12.86575 -12.75388 -12.68029 -12.58860 -12.34553 -12.18376 -12.10756 -11.97666 -11.66848 -11.32530 -10.61483 -10.26497 -8.25874 -6.41193 0.33678 1.37428 1.42896 1.43849 1.49275 1.54210 2.38379 2.94924 3.03880 3.57377 3.80326 3.83625 4.02884 4.30783 4.53766 4.60755 4.69669 4.70319 4.72311 4.78491 4.85608 4.89552 4.90612 4.96749 5.02102 5.18787 5.29667 5.34079 5.35639 5.61403 5.77205 6.01015 6.59576 7.26667 7.46107 8.80300 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.044270 B = 0.006856 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.328316 B = 4083.211512 C = 4243.457827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.131 3.869 3 H 0.043 0.957 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.199 3.801 13 N -0.328 5.328 14 N -0.318 5.318 15 C 0.149 3.851 16 C 0.031 3.969 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.134 4.134 20 O -0.237 6.237 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.086 0.914 24 H 0.272 0.728 25 H 0.048 0.952 26 H 0.113 0.887 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.110 0.890 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 -0.146 13.867 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.111 3.889 3 H 0.061 0.939 4 C -0.574 4.574 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.195 1.195 11 H -0.197 1.197 12 C -0.011 4.011 13 N -0.173 5.173 14 N -0.163 5.163 15 C -0.063 4.063 16 C 0.029 3.971 17 C -0.193 4.193 18 C -0.201 4.201 19 C -0.192 4.192 20 O -0.117 6.117 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.104 0.896 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.130 0.870 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.996 -1.250 13.671 14.980 hybrid contribution 0.415 0.732 -1.158 1.431 sum 6.412 -0.518 12.513 14.070 Atomic orbital electron populations 1.21626 0.94307 1.00339 1.01355 1.17552 0.94405 0.94383 0.82526 0.93920 1.20951 1.33307 1.12921 0.90267 0.93577 1.25596 0.94653 0.95521 1.01420 1.69921 1.36091 1.23101 1.25193 0.85503 0.78748 0.78657 0.78163 1.19968 1.19542 1.19739 1.29206 0.89518 0.90538 0.91877 1.74297 1.21778 1.13318 1.07934 1.74139 1.11028 1.25162 1.05985 1.28971 0.99922 0.82111 0.95328 1.19584 0.93679 0.99988 0.83802 1.21930 0.95839 0.97414 1.04159 1.21943 1.01492 0.92433 1.04224 1.21919 0.99177 1.02103 0.95982 1.84807 1.55174 1.42459 1.29256 0.94632 0.94808 0.89555 0.91874 0.93278 0.86876 0.92388 0.92573 0.87137 0.92947 0.92358 0.86955 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.95 71.98 0.64 -5.18 16 2 C 0.13 6.91 2.77 -12.28 -0.03 6.88 16 3 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.54 -30.33 8.55 25.60 0.22 -30.11 16 5 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 6 C 0.03 1.58 5.30 84.65 0.45 2.03 16 7 N -0.91 -49.76 11.32 21.45 0.24 -49.52 16 8 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.20 9.91 6.92 88.34 0.61 10.52 16 13 N -0.33 -16.60 12.22 -165.51 -2.02 -18.63 16 14 N -0.32 -14.05 12.22 -165.50 -2.02 -16.07 16 15 C 0.15 5.62 6.57 88.34 0.58 6.20 16 16 C 0.03 0.77 0.99 -52.93 -0.05 0.72 16 17 C -0.14 -2.80 8.46 71.98 0.61 -2.19 16 18 C -0.14 -2.90 8.06 71.98 0.58 -2.32 16 19 C -0.13 -2.64 8.46 71.98 0.61 -2.03 16 20 O -0.24 -10.38 10.32 -3.66 -0.04 -10.42 16 21 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.09 4.48 6.07 -2.39 -0.01 4.47 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.92 281.80 3.48 -61.44 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.08 Total: 3.36 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.21 Total: -15.48 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -3.80 Total: -84.21 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.04 Total: -10.42 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.92 3.48 -61.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349974684.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.600 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds