Wall clock time and date at job start Sun Mar 29 2020 21:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.36937 * 120.00051 * 84.85639 * 3 2 1 5 5 H 1.07996 * 119.99901 * 166.15951 * 4 3 2 6 6 C 1.38814 * 120.00023 * 346.16131 * 4 3 2 7 7 N 1.31624 * 119.99956 * 13.75993 * 6 4 3 8 8 Si 1.86796 * 120.00222 * 193.75912 * 6 4 3 9 9 H 1.48498 * 109.47111 * 59.99749 * 8 6 4 10 10 H 1.48492 * 109.47253 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47113 * 300.00285 * 8 6 4 12 12 C 1.46505 * 119.99917 * 264.85543 * 3 2 1 13 13 H 1.09008 * 109.46821 * 173.84846 * 12 3 2 14 14 C 1.52997 * 109.47046 * 53.85097 * 12 3 2 15 15 C 1.50699 * 109.47065 * 293.85067 * 12 3 2 16 16 N 1.30709 * 125.52753 * 42.94660 * 15 12 3 17 17 N 1.40450 * 106.79233 * 179.86044 * 16 15 12 18 18 H 0.96998 * 126.82509 * 180.15762 * 17 16 15 19 19 C 1.34432 * 106.35047 * 0.39493 * 17 16 15 20 20 C 1.50698 * 125.95778 * 179.78185 * 19 17 16 21 21 N 1.30832 * 108.07768 * 359.75906 * 19 17 16 22 22 H 1.09004 * 109.47583 * 65.87668 * 1 2 3 23 23 H 1.09004 * 109.47126 * 185.87772 * 1 2 3 24 24 H 1.09002 * 109.47406 * 305.87693 * 1 2 3 25 25 H 1.08996 * 109.47294 * 119.99793 * 2 1 3 26 26 H 1.09006 * 109.47171 * 240.00627 * 2 1 3 27 27 H 0.96991 * 120.00214 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47491 * 300.00171 * 14 12 3 29 29 H 1.09005 * 109.47586 * 59.99963 * 14 12 3 30 30 H 1.08994 * 109.47075 * 179.97438 * 14 12 3 31 31 H 1.08996 * 109.47428 * 269.97236 * 20 19 17 32 32 H 1.08999 * 109.47553 * 29.97700 * 20 19 17 33 33 H 1.09003 * 109.47049 * 149.97312 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1463 2.0622 1.1811 5 1 2.7073 2.9844 1.2147 6 6 1.5548 1.5672 2.3353 7 7 1.1084 0.3294 2.3672 8 14 1.3926 2.6577 3.8432 9 1 0.5764 3.8513 3.5054 10 1 0.7305 1.8985 4.9342 11 1 2.7416 3.0905 4.2886 12 6 2.3697 2.0339 -1.2637 13 1 2.6052 3.0820 -1.0781 14 6 1.1886 1.9403 -2.2317 15 6 3.5689 1.3487 -1.8665 16 7 3.7557 0.0563 -1.9245 17 7 4.9896 -0.1470 -2.5637 18 1 5.4095 -0.9992 -2.7595 19 6 5.4757 1.0743 -2.8455 20 6 6.7852 1.3691 -3.5304 21 7 4.6132 1.9621 -2.4218 22 1 -0.3634 0.4200 -0.9379 23 1 -0.3633 -1.0223 0.1052 24 1 -0.3634 0.6023 0.8327 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 0.6948 -0.0164 3.1735 28 1 0.9530 0.8924 -2.4173 29 1 0.3212 2.4360 -1.7957 30 1 1.4499 2.4263 -3.1717 31 1 7.5730 1.4633 -2.7831 32 1 7.0286 0.5562 -4.2145 33 1 6.7012 2.3012 -4.0892 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641650323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:31 Heat of formation + Delta-G solvation = 116.132205 kcal Electronic energy + Delta-G solvation = -15932.135918 eV Core-core repulsion = 13417.092378 eV Total energy + Delta-G solvation = -2515.043539 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55449 -36.55070 -33.11441 -31.89992 -31.31815 -29.53719 -28.40162 -27.56027 -24.09633 -22.96057 -20.98477 -20.51418 -18.77257 -17.31279 -16.70270 -15.32382 -14.98975 -13.97013 -13.83253 -13.56884 -13.13326 -12.80098 -12.73866 -12.00034 -11.82105 -11.57991 -11.33099 -11.16711 -10.81651 -10.60864 -10.43181 -10.38789 -9.89867 -9.55470 -9.49202 -9.44489 -9.10765 -8.86229 -8.25721 -6.80383 -5.51619 -3.04593 2.12399 3.12069 3.44910 3.47648 3.50311 3.53898 4.37308 4.58119 5.01031 5.23203 5.39336 5.45571 5.56222 5.75331 5.80926 6.15158 6.23021 6.45740 6.69138 6.84386 6.92000 6.98315 7.10806 7.17526 7.34433 7.41379 7.53726 7.78930 8.09100 8.21060 8.64083 8.71996 9.38317 9.97347 10.41057 11.36965 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.008493 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.054619 B = 3295.849131 C = 3582.150593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.156 3.844 3 N -0.582 5.582 4 C -0.247 4.247 5 H 0.073 0.927 6 C -0.001 4.001 7 N -0.900 5.900 8 Si 0.905 3.095 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.256 3.744 13 H 0.087 0.913 14 C -0.149 4.149 15 C 0.232 3.768 16 N -0.296 5.296 17 N -0.498 5.498 18 H 0.430 0.570 19 C 0.260 3.740 20 C -0.071 4.071 21 N -0.542 5.542 22 H 0.008 0.992 23 H 0.018 0.982 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.020 0.980 27 H 0.249 0.751 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.233 -0.231 -10.700 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.032 3.968 3 N -0.302 5.302 4 C -0.376 4.376 5 H 0.091 0.909 6 C -0.198 4.198 7 N -0.547 5.547 8 Si 0.735 3.265 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.213 1.213 12 C 0.143 3.857 13 H 0.105 0.895 14 C -0.209 4.209 15 C -0.053 4.053 16 N -0.123 5.123 17 N -0.216 5.216 18 H 0.274 0.726 19 C -0.019 4.019 20 C -0.130 4.130 21 N -0.272 5.272 22 H 0.027 0.973 23 H 0.037 0.963 24 H 0.090 0.910 25 H 0.122 0.878 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.634 -0.457 -10.228 12.199 hybrid contribution 0.412 -0.131 0.646 0.778 sum 7.046 -0.589 -9.581 11.908 Atomic orbital electron populations 1.22357 0.99844 0.98427 0.98958 1.21196 0.91797 0.83880 0.99914 1.44237 1.74107 1.11860 0.99971 1.19318 1.27310 1.04565 0.86454 0.90904 1.24838 1.00128 0.96643 0.98148 1.70173 1.44769 1.12852 1.26918 0.86318 0.77745 0.80053 0.82394 1.21153 1.21739 1.21295 1.18699 0.85868 0.94924 0.86259 0.89465 1.22249 0.98857 1.01843 0.97920 1.26187 0.96741 0.88061 0.94360 1.78221 0.97003 1.18817 1.18287 1.48240 1.17734 1.08513 1.47135 0.72581 1.24256 0.97464 0.82613 0.97578 1.20265 0.89284 1.03752 0.99727 1.70365 1.03532 1.33468 1.19832 0.97277 0.96285 0.91011 0.87758 0.96222 0.93985 0.92605 0.91646 0.93851 0.89594 0.90541 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.15 37.16 0.34 -3.01 16 2 C 0.16 4.04 4.64 -4.04 -0.02 4.02 16 3 N -0.58 -15.07 2.43 -166.98 -0.41 -15.48 16 4 C -0.25 -6.90 9.70 -15.06 -0.15 -7.05 16 5 H 0.07 2.00 7.78 -52.49 -0.41 1.59 16 6 C 0.00 -0.04 5.03 -17.43 -0.09 -0.12 16 7 N -0.90 -25.71 7.75 55.49 0.43 -25.28 16 8 Si 0.90 22.10 29.58 -169.99 -5.03 17.07 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.26 5.75 3.24 -69.08 -0.22 5.53 16 13 H 0.09 1.96 7.84 -51.92 -0.41 1.55 16 14 C -0.15 -2.92 8.05 37.16 0.30 -2.62 16 15 C 0.23 5.04 6.96 -156.86 -1.09 3.95 16 16 N -0.30 -6.24 10.54 32.42 0.34 -5.90 16 17 N -0.50 -7.92 7.45 32.62 0.24 -7.68 16 18 H 0.43 4.98 8.96 -182.33 -1.63 3.34 16 19 C 0.26 4.01 8.24 -155.69 -1.28 2.73 16 20 C -0.07 -0.65 10.51 36.00 0.38 -0.27 16 21 N -0.54 -10.65 11.19 -8.16 -0.09 -10.74 16 22 H 0.01 0.19 6.16 -51.93 -0.32 -0.13 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.95 6.25 -51.93 -0.32 1.62 16 25 H 0.10 3.05 5.74 -51.93 -0.30 2.75 16 26 H 0.02 0.49 5.78 -51.93 -0.30 0.19 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.05 1.13 6.52 -51.93 -0.34 0.79 16 29 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 267.85 15.07 4.04 4.04 Total: -1.00 -32.44 267.85 -8.00 -40.44 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.70 Total: 0.38 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.83 Total: 3.15 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: 0.52 Total: -65.08 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.44 -8.00 -40.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641650323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.572 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds