Wall clock time and date at job start Sun Mar 29 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.36937 * 120.00051 * 84.85639 * 3 2 1 5 5 H 1.07996 * 119.99901 * 166.15951 * 4 3 2 6 6 C 1.38814 * 120.00023 * 346.16131 * 4 3 2 7 7 N 1.31624 * 119.99956 * 13.75993 * 6 4 3 8 8 Si 1.86796 * 120.00222 * 193.75912 * 6 4 3 9 9 H 1.48498 * 109.47111 * 59.99749 * 8 6 4 10 10 H 1.48492 * 109.47253 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47113 * 300.00285 * 8 6 4 12 12 C 1.46505 * 119.99917 * 264.85543 * 3 2 1 13 13 H 1.09008 * 109.46821 * 173.84846 * 12 3 2 14 14 C 1.52997 * 109.47046 * 53.85097 * 12 3 2 15 15 C 1.50699 * 109.47065 * 293.85067 * 12 3 2 16 16 N 1.30709 * 125.52753 * 42.94660 * 15 12 3 17 17 N 1.40450 * 106.79233 * 179.86044 * 16 15 12 18 18 H 0.96998 * 126.82509 * 180.15762 * 17 16 15 19 19 C 1.34432 * 106.35047 * 0.39493 * 17 16 15 20 20 C 1.50698 * 125.95778 * 179.78185 * 19 17 16 21 21 N 1.30832 * 108.07768 * 359.75906 * 19 17 16 22 22 H 1.09004 * 109.47583 * 65.87668 * 1 2 3 23 23 H 1.09004 * 109.47126 * 185.87772 * 1 2 3 24 24 H 1.09002 * 109.47406 * 305.87693 * 1 2 3 25 25 H 1.08996 * 109.47294 * 119.99793 * 2 1 3 26 26 H 1.09006 * 109.47171 * 240.00627 * 2 1 3 27 27 H 0.96991 * 120.00214 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47491 * 300.00171 * 14 12 3 29 29 H 1.09005 * 109.47586 * 59.99963 * 14 12 3 30 30 H 1.08994 * 109.47075 * 179.97438 * 14 12 3 31 31 H 1.08996 * 109.47428 * 269.97236 * 20 19 17 32 32 H 1.08999 * 109.47553 * 29.97700 * 20 19 17 33 33 H 1.09003 * 109.47049 * 149.97312 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1463 2.0622 1.1811 5 1 2.7073 2.9844 1.2147 6 6 1.5548 1.5672 2.3353 7 7 1.1084 0.3294 2.3672 8 14 1.3926 2.6577 3.8432 9 1 0.5764 3.8513 3.5054 10 1 0.7305 1.8985 4.9342 11 1 2.7416 3.0905 4.2886 12 6 2.3697 2.0339 -1.2637 13 1 2.6052 3.0820 -1.0781 14 6 1.1886 1.9403 -2.2317 15 6 3.5689 1.3487 -1.8665 16 7 3.7557 0.0563 -1.9245 17 7 4.9896 -0.1470 -2.5637 18 1 5.4095 -0.9992 -2.7595 19 6 5.4757 1.0743 -2.8455 20 6 6.7852 1.3691 -3.5304 21 7 4.6132 1.9621 -2.4218 22 1 -0.3634 0.4200 -0.9379 23 1 -0.3633 -1.0223 0.1052 24 1 -0.3634 0.6023 0.8327 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 0.6948 -0.0164 3.1735 28 1 0.9530 0.8924 -2.4173 29 1 0.3212 2.4360 -1.7957 30 1 1.4499 2.4263 -3.1717 31 1 7.5730 1.4633 -2.7831 32 1 7.0286 0.5562 -4.2145 33 1 6.7012 2.3012 -4.0892 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641650323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:30 Heat of formation + Delta-G solvation = 95.117430 kcal Electronic energy + Delta-G solvation = -15933.047187 eV Core-core repulsion = 13417.092378 eV Total energy + Delta-G solvation = -2515.954808 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.95894 -38.42914 -34.81596 -33.20321 -32.94026 -31.44724 -30.30400 -28.70407 -26.03746 -24.68872 -22.82998 -21.88128 -20.44965 -18.83005 -18.58977 -17.10468 -16.53289 -15.67606 -15.49862 -15.01092 -14.93186 -13.89797 -13.79347 -13.66472 -13.57697 -13.26039 -13.04919 -12.78645 -12.58545 -12.51145 -12.36658 -12.20166 -11.83320 -11.49327 -11.27609 -10.90333 -10.84621 -10.34735 -10.29662 -8.83918 -7.62300 -5.16831 0.79130 1.49122 1.51841 1.58133 1.91829 2.00782 2.54286 3.17930 3.34938 3.66804 3.94177 4.05637 4.43443 4.54988 4.74346 4.75934 4.82501 4.96437 5.07982 5.12375 5.19429 5.27293 5.34082 5.39303 5.50114 5.61619 5.63774 5.98668 6.16516 6.39275 6.52991 7.26081 7.29954 7.95270 8.35348 9.24423 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034094 B = 0.008493 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.054619 B = 3295.849131 C = 3582.150593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.170 3.830 3 N -0.595 5.595 4 C -0.263 4.263 5 H 0.070 0.930 6 C -0.048 4.048 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.284 1.284 12 C 0.251 3.749 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.216 3.784 16 N -0.334 5.334 17 N -0.487 5.487 18 H 0.450 0.550 19 C 0.275 3.725 20 C -0.068 4.068 21 N -0.576 5.576 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.243 0.757 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 0.078 -12.039 14.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 N -0.316 5.316 4 C -0.392 4.392 5 H 0.088 0.912 6 C -0.242 4.242 7 N -0.566 5.566 8 Si 0.795 3.205 9 H -0.206 1.206 10 H -0.220 1.220 11 H -0.210 1.210 12 C 0.139 3.861 13 H 0.097 0.903 14 C -0.194 4.194 15 C -0.069 4.069 16 N -0.163 5.163 17 N -0.207 5.207 18 H 0.297 0.703 19 C -0.003 4.003 20 C -0.126 4.126 21 N -0.307 5.307 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.966 -0.158 -11.609 14.080 hybrid contribution 0.162 -0.253 0.955 1.001 sum 8.127 -0.411 -10.654 13.406 Atomic orbital electron populations 1.22165 0.99042 0.98433 0.98577 1.20888 0.92319 0.83975 0.98317 1.44309 1.74805 1.11845 1.00678 1.19556 1.27429 1.04625 0.87635 0.91213 1.25510 1.00291 0.97731 1.00661 1.70385 1.45277 1.13846 1.27131 0.85358 0.77560 0.78423 0.79147 1.20567 1.21994 1.20996 1.18796 0.87304 0.94336 0.85651 0.90255 1.22077 0.97575 1.01516 0.98245 1.25770 0.97177 0.88501 0.95493 1.78044 0.99742 1.18743 1.19739 1.48077 1.16368 1.09945 1.46305 0.70264 1.25351 0.98179 0.81464 0.95309 1.20592 0.86002 1.05678 1.00377 1.70330 1.04052 1.34943 1.21416 0.95558 0.95521 0.93750 0.91374 0.95575 0.94614 0.93383 0.91846 0.91438 0.87889 0.86797 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 9.15 71.98 0.66 -5.41 16 2 C 0.17 8.91 4.64 86.38 0.40 9.31 16 3 N -0.60 -31.29 2.43 -682.19 -1.66 -32.95 16 4 C -0.26 -14.91 9.70 84.03 0.81 -14.09 16 5 H 0.07 3.89 7.78 -2.91 -0.02 3.87 16 6 C -0.05 -2.69 5.03 84.86 0.43 -2.27 16 7 N -0.92 -53.60 7.75 21.65 0.17 -53.43 16 8 Si 0.97 45.99 29.58 68.60 2.03 48.02 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.25 11.32 3.24 44.24 0.14 11.46 16 13 H 0.08 3.62 7.84 -2.38 -0.02 3.60 16 14 C -0.13 -5.19 8.05 71.98 0.58 -4.61 16 15 C 0.22 9.30 6.96 138.63 0.96 10.27 16 16 N -0.33 -13.90 10.54 -51.34 -0.54 -14.44 16 17 N -0.49 -14.52 7.45 -50.71 -0.38 -14.89 16 18 H 0.45 9.26 8.96 -213.10 -1.91 7.35 16 19 C 0.28 7.80 8.24 138.22 1.14 8.94 16 20 C -0.07 -0.96 10.51 71.24 0.75 -0.21 16 21 N -0.58 -21.95 11.19 -179.73 -2.01 -23.96 16 22 H 0.03 1.16 6.16 -2.38 -0.01 1.15 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 2.43 6.25 -2.39 -0.01 2.41 16 25 H 0.07 4.10 5.74 -2.39 -0.01 4.09 16 26 H 0.03 1.33 5.78 -2.38 -0.01 1.31 16 27 H 0.24 13.92 8.31 -92.71 -0.77 13.14 16 28 H 0.05 1.91 6.52 -2.39 -0.02 1.89 16 29 H 0.06 2.43 8.04 -2.38 -0.02 2.41 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.05 267.85 2.69 -68.35 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -0.79 Total: 9.90 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.88 Total: 13.39 kcal Atomic # 7 Polarization: -135.25 SS G_CDS: -4.42 Total: -139.67 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.05 2.69 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641650323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.472 kcal (2) G-P(sol) polarization free energy of solvation -71.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds