Wall clock time and date at job start Sun Mar 29 2020 21:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46835 * 111.00360 * 2 1 4 4 C 1.53041 * 109.50394 * 185.89585 * 3 2 1 5 5 C 1.53113 * 109.25624 * 300.76942 * 4 3 2 6 6 C 1.53113 * 109.19172 * 57.68340 * 5 4 3 7 7 H 1.08998 * 109.56978 * 62.48307 * 6 5 4 8 8 C 1.53693 * 109.18102 * 183.04283 * 6 5 4 9 9 N 1.46919 * 108.52095 * 174.41335 * 8 6 5 10 10 C 1.36937 * 120.63299 * 126.31072 * 9 8 6 11 11 H 1.07999 * 120.00186 * 207.53776 * 10 9 8 12 12 C 1.38809 * 119.99884 * 27.54308 * 10 9 8 13 13 N 1.31623 * 120.00120 * 25.83729 * 12 10 9 14 14 Si 1.86798 * 119.99778 * 205.55810 * 12 10 9 15 15 H 1.48498 * 109.47185 * 90.00143 * 14 12 10 16 16 H 1.48507 * 109.47193 * 209.99981 * 14 12 10 17 17 H 1.48503 * 109.47454 * 329.99768 * 14 12 10 18 18 C 1.46932 * 118.73235 * 306.04680 * 9 8 6 19 19 C 1.53183 * 108.77670 * 53.85308 * 18 9 8 20 20 C 1.46844 * 110.99527 * 124.25925 * 2 1 3 21 21 H 1.08998 * 109.46965 * 294.22816 * 20 2 1 22 22 H 1.09000 * 109.47378 * 295.74157 * 1 2 3 23 23 H 1.09007 * 109.46638 * 55.74021 * 1 2 3 24 24 H 1.08997 * 109.47356 * 175.73781 * 1 2 3 25 25 H 1.09000 * 109.46594 * 305.90524 * 3 2 1 26 26 H 1.09006 * 109.46708 * 65.89081 * 3 2 1 27 27 H 1.08997 * 109.50741 * 60.70541 * 4 3 2 28 28 H 1.08997 * 109.50435 * 180.79735 * 4 3 2 29 29 H 1.08994 * 109.51998 * 177.60200 * 5 4 3 30 30 H 1.09004 * 109.51903 * 297.71699 * 5 4 3 31 31 H 1.09001 * 109.75306 * 54.68053 * 8 6 5 32 32 H 1.09003 * 109.67141 * 294.10095 * 8 6 5 33 33 H 0.96995 * 119.99822 * 4.05511 * 13 12 10 34 34 H 1.08997 * 109.58560 * 173.64286 * 18 9 8 35 35 H 1.09004 * 109.58057 * 293.91787 * 18 9 8 36 36 H 1.08996 * 109.49746 * 65.29128 * 19 18 9 37 37 H 1.09003 * 109.50013 * 185.39665 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5180 1.3335 -0.1482 5 6 4.1190 0.5367 1.0130 6 6 3.5186 -0.8718 1.0209 7 1 3.7837 -1.3869 0.0976 8 6 4.0642 -1.6465 2.2310 9 7 3.3794 -2.9444 2.3016 10 6 4.0966 -4.1098 2.3540 11 1 3.6694 -5.0245 1.9703 12 6 5.3726 -4.1154 2.9003 13 7 5.7096 -3.2105 3.7947 14 14 6.6090 -5.4122 2.3720 15 1 7.3803 -4.9143 1.2048 16 1 7.5386 -5.6964 3.4948 17 1 5.8912 -6.6568 1.9966 18 6 1.9104 -2.9679 2.3208 19 6 1.3888 -2.1773 1.1168 20 6 1.9951 -0.7718 1.1331 21 1 1.7315 -0.2732 2.0659 22 1 -0.3634 0.4463 0.9257 23 1 -0.3633 0.5786 -0.8494 24 1 -0.3634 -1.0248 -0.0764 25 1 1.5628 1.9259 -0.8324 26 1 1.7335 1.8604 0.9381 27 1 3.7803 0.8554 -1.0919 28 1 3.9101 2.3504 -0.1340 29 1 5.1998 0.4712 0.8888 30 1 3.8902 1.0362 1.9544 31 1 3.8748 -1.0833 3.1448 32 1 5.1361 -1.8048 2.1124 33 1 5.0494 -2.5764 4.1156 34 1 1.5606 -3.9984 2.2606 35 1 1.5498 -2.5130 3.2434 36 1 1.6745 -2.6861 0.1961 37 1 0.3026 -2.1056 1.1715 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088091237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:30 Heat of formation + Delta-G solvation = 14.446296 kcal Electronic energy + Delta-G solvation = -16644.377564 eV Core-core repulsion = 14228.464936 eV Total energy + Delta-G solvation = -2415.912628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45432 -36.05775 -33.66984 -32.57924 -30.03538 -28.98113 -26.38591 -25.21762 -23.23885 -22.26204 -20.93833 -19.62591 -19.14356 -17.25820 -15.39733 -15.12062 -14.58700 -14.22520 -14.00070 -13.71487 -13.41550 -13.30837 -12.59382 -12.40852 -12.15839 -12.06128 -11.53977 -11.20474 -10.99721 -10.85038 -10.71365 -10.50055 -10.28067 -10.11406 -10.00395 -9.80728 -9.39702 -9.19694 -8.31558 -8.06352 -6.83227 -6.05221 -3.18064 3.53500 3.55338 3.71873 4.14509 4.62431 5.05532 5.12432 5.14676 5.29894 5.41912 5.52971 5.56657 5.59070 5.67435 5.74333 5.81713 5.93949 5.97962 6.03602 6.17214 6.28119 6.30190 6.36857 6.42110 6.45722 6.61010 6.67460 6.75800 6.94224 7.13989 7.24457 7.36295 7.46144 8.05821 8.61521 9.15967 9.89236 10.34579 11.24873 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038934 B = 0.008615 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.987097 B = 3249.493928 C = 3652.640649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.059 3.941 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.094 4.094 7 H 0.074 0.926 8 C 0.159 3.841 9 N -0.599 5.599 10 C -0.349 4.349 11 H 0.056 0.944 12 C -0.025 4.025 13 N -0.917 5.917 14 Si 1.068 2.932 15 H -0.293 1.293 16 H -0.290 1.290 17 H -0.292 1.292 18 C 0.148 3.852 19 C -0.127 4.127 20 C 0.101 3.899 21 H 0.030 0.970 22 H 0.019 0.981 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.081 0.919 33 H 0.268 0.732 34 H 0.056 0.944 35 H 0.013 0.987 36 H 0.067 0.933 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.424 8.009 -6.691 12.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.115 4.115 7 H 0.093 0.907 8 C 0.032 3.968 9 N -0.323 5.323 10 C -0.478 4.478 11 H 0.074 0.926 12 C -0.227 4.227 13 N -0.557 5.557 14 Si 0.898 3.102 15 H -0.220 1.220 16 H -0.216 1.216 17 H -0.219 1.219 18 C 0.021 3.979 19 C -0.167 4.167 20 C -0.007 4.007 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.086 0.914 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.697 7.215 -6.920 11.506 hybrid contribution -2.013 0.983 0.557 2.309 sum -7.710 8.198 -6.363 12.928 Atomic orbital electron populations 1.22374 0.88256 1.02240 0.99581 1.61975 1.06869 1.13007 1.44763 1.22038 0.95938 0.89413 0.99563 1.21571 0.94248 0.99615 0.99799 1.21606 1.00167 0.96076 0.97589 1.21880 0.92908 0.94996 1.01722 0.90725 1.21086 0.98076 0.85312 0.92289 1.44142 0.99689 1.02525 1.85899 1.20014 1.00996 0.88396 1.38403 0.92591 1.25844 0.98886 1.03072 0.94904 1.70761 1.39079 1.20976 1.24867 0.83470 0.75865 0.74946 0.75932 1.22026 1.21633 1.21880 1.20892 0.85722 0.97687 0.93560 1.22173 0.98085 0.95146 1.01265 1.21561 0.95648 0.93572 0.89899 0.95178 0.96255 0.92093 0.90945 0.91465 0.95527 0.91320 0.92116 0.91762 0.92739 0.96826 0.90107 0.92069 0.92517 0.96961 0.91435 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.05 60.06 0.54 0.86 16 2 N -0.54 -8.49 4.74 -234.85 -1.11 -9.61 16 3 C 0.06 0.81 5.47 -3.84 -0.02 0.79 16 4 C -0.11 -1.60 6.09 -26.65 -0.16 -1.76 16 5 C -0.12 -1.93 5.27 -26.61 -0.14 -2.07 16 6 C -0.09 -1.86 2.34 -90.15 -0.21 -2.07 16 7 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 8 C 0.16 3.79 3.99 -3.45 -0.01 3.78 16 9 N -0.60 -15.38 2.85 -172.02 -0.49 -15.87 16 10 C -0.35 -9.92 9.49 -15.06 -0.14 -10.06 16 11 H 0.06 1.60 7.95 -52.49 -0.42 1.18 16 12 C -0.03 -0.72 4.66 -17.43 -0.08 -0.80 16 13 N -0.92 -27.74 12.46 55.49 0.69 -27.04 16 14 Si 1.07 25.66 29.99 -169.99 -5.10 20.56 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.15 3.23 6.51 -3.71 -0.02 3.21 16 19 C -0.13 -2.35 4.98 -26.59 -0.13 -2.49 16 20 C 0.10 1.82 1.68 -67.65 -0.11 1.71 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.06 0.69 8.09 -51.92 -0.42 0.27 16 24 H 0.07 0.94 6.18 -51.93 -0.32 0.62 16 25 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.01 0.34 7.87 -51.93 -0.41 -0.07 16 32 H 0.08 2.16 6.31 -51.93 -0.33 1.83 16 33 H 0.27 8.20 6.69 -40.82 -0.27 7.92 16 34 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.05 0.83 6.24 -51.93 -0.32 0.51 16 LS Contribution 277.65 15.07 4.18 4.18 Total: -1.00 -30.09 277.65 -8.67 -38.76 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -6.35 Total: -2.07 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -0.50 Total: -8.92 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.91 Total: -52.53 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.56 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.09 -8.67 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088091237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.211 kcal (2) G-P(sol) polarization free energy of solvation -30.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds