Wall clock time and date at job start Sun Mar 29 2020 21:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00241 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00288 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99991 * 3 2 1 7 7 C 1.39050 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99900 * 0.02562 * 7 2 1 9 9 N 1.36845 * 120.00385 * 179.97438 * 7 2 1 10 10 C 1.34777 * 120.00247 * 180.02562 * 9 7 2 11 11 O 1.21669 * 119.99732 * 0.26965 * 10 9 7 12 12 C 1.47076 * 119.99790 * 179.97438 * 10 9 7 13 13 C 1.37116 * 126.64962 * 179.97438 * 12 10 9 14 14 C 1.40932 * 105.45583 * 180.02562 * 13 12 10 15 15 C 1.47632 * 126.26860 * 179.97438 * 14 13 12 16 16 O 1.21483 * 120.00053 * 359.97438 * 15 14 13 17 17 O 1.34724 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.32005 * 107.46148 * 359.97438 * 14 13 12 19 19 N 1.28464 * 110.51043 * 359.71867 * 18 14 13 20 20 H 0.96997 * 125.05876 * 180.27762 * 19 18 14 21 21 H 0.96996 * 120.00305 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99710 * 359.97438 * 9 7 2 23 23 H 1.08001 * 127.27290 * 0.03102 * 13 12 10 24 24 H 0.96704 * 116.99832 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4451 2.6526 0.7001 6 1 3.5452 1.4402 0.7001 7 6 2.0089 -1.2042 -0.0005 8 1 1.4690 -2.1395 -0.0014 9 7 3.3774 -1.2042 -0.0011 10 6 4.0513 -2.3714 -0.0021 11 8 3.4429 -3.4251 -0.0075 12 6 5.5220 -2.3713 -0.0033 13 6 6.3406 -3.4714 -0.0039 14 6 7.6545 -2.9618 -0.0043 15 6 8.8992 -3.7558 -0.0045 16 8 8.8454 -4.9694 -0.0038 17 8 10.0945 -3.1344 -0.0054 18 7 7.5685 -1.6446 -0.0045 19 7 6.3386 -1.2738 -0.0101 20 1 6.0343 -0.3528 -0.0152 21 1 -0.4850 0.8400 0.0004 22 1 3.8624 -0.3642 -0.0014 23 1 6.0415 -4.5092 -0.0041 24 1 10.8815 -3.6965 -0.0051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574481108.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:02 Heat of formation + Delta-G solvation = -49.327047 kcal Electronic energy + Delta-G solvation = -14556.490818 eV Core-core repulsion = 11664.887576 eV Total energy + Delta-G solvation = -2891.603242 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 225.058 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.55146 -39.87497 -38.34356 -36.12516 -34.42815 -32.34704 -31.69712 -30.75930 -25.73772 -25.01337 -22.55225 -20.66481 -20.18158 -19.34873 -18.11174 -17.47540 -16.68458 -16.10303 -15.34094 -15.07316 -14.80109 -13.89572 -13.60024 -13.51651 -13.36643 -13.03977 -12.40458 -11.65020 -11.47029 -11.11892 -10.90655 -10.87031 -10.27558 -9.95627 -9.55773 -9.07184 -9.04197 -8.53521 -6.63265 -4.10985 1.24508 1.65554 2.54116 2.77012 2.86367 2.95213 3.09836 3.12410 3.81387 3.85720 4.15838 4.46971 4.99974 5.15526 5.40155 5.63245 5.83872 6.32813 6.38268 6.75760 7.22214 7.63447 7.77940 7.92340 8.23899 8.60232 9.04022 9.40507 10.47837 Molecular weight = 225.06amu Principal moments of inertia in cm(-1) A = 0.054621 B = 0.006468 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.496086 B = 4328.173336 C = 4830.823759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.047 3.953 3 Si 0.879 3.121 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.305 4.305 8 H 0.129 0.871 9 N -0.565 5.565 10 C 0.501 3.499 11 O -0.554 6.554 12 C 0.008 3.992 13 C -0.119 4.119 14 C -0.016 4.016 15 C 0.579 3.421 16 O -0.506 6.506 17 O -0.503 6.503 18 N -0.222 5.222 19 N -0.370 5.370 20 H 0.448 0.552 21 H 0.280 0.720 22 H 0.366 0.634 23 H 0.175 0.825 24 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.867 1.576 -0.045 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.146 0.854 9 N -0.202 5.202 10 C 0.286 3.714 11 O -0.435 6.435 12 C -0.119 4.119 13 C -0.148 4.148 14 C -0.172 4.172 15 C 0.421 3.579 16 O -0.392 6.392 17 O -0.314 6.314 18 N -0.063 5.063 19 N -0.091 5.091 20 H 0.293 0.707 21 H 0.091 0.909 22 H 0.199 0.801 23 H 0.192 0.808 24 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 14.488 1.765 -0.049 14.596 hybrid contribution 0.435 0.926 0.031 1.024 sum 14.924 2.691 -0.019 15.164 Atomic orbital electron populations 1.69579 1.05758 1.28300 1.45901 1.25133 0.95606 0.98267 0.96908 0.86685 0.79786 0.83784 0.79282 1.19015 1.19415 1.19646 1.19523 0.78574 0.97228 1.48106 0.85393 1.42130 1.08064 1.05568 1.64402 1.16281 0.82720 0.85185 0.87174 1.90745 1.66745 1.30442 1.55605 1.22159 0.93972 0.86870 1.08866 1.21687 0.88513 1.00251 1.04310 1.20466 0.92193 0.89850 1.14720 1.19197 0.82209 0.84767 0.71764 1.90925 1.87547 1.14259 1.46430 1.84650 1.16276 1.44830 1.85594 1.73573 1.01756 1.14421 1.16509 1.43904 1.02879 1.09953 1.52393 0.70664 0.90917 0.80124 0.80762 0.72887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.11 13.95 55.50 0.77 -22.34 14 2 C 0.05 1.19 5.50 -17.45 -0.10 1.09 14 3 Si 0.88 17.36 27.74 -169.99 -4.71 12.65 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.71 14 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 14 6 H -0.27 -4.70 6.52 56.52 0.37 -4.33 14 7 C -0.31 -7.98 10.16 -15.01 -0.15 -8.13 14 8 H 0.13 3.83 7.38 -52.49 -0.39 3.44 14 9 N -0.56 -12.41 5.08 -12.06 -0.06 -12.47 14 10 C 0.50 11.04 7.75 -12.68 -0.10 10.94 14 11 O -0.55 -14.45 16.47 5.22 0.09 -14.37 14 12 C 0.01 0.14 7.10 -82.47 -0.59 -0.45 14 13 C -0.12 -2.05 10.55 -38.97 -0.41 -2.46 14 14 C -0.02 -0.25 7.13 -82.94 -0.59 -0.84 14 15 C 0.58 8.15 8.34 34.56 0.29 8.44 14 16 O -0.51 -8.10 17.70 -19.25 -0.34 -8.44 14 17 O -0.50 -5.33 13.44 -40.56 -0.54 -5.87 14 18 N -0.22 -3.37 12.22 33.32 0.41 -2.97 14 19 N -0.37 -5.45 6.84 33.25 0.23 -5.22 14 20 H 0.45 5.20 8.19 -190.45 -1.56 3.64 14 21 H 0.28 6.90 8.31 -40.82 -0.34 6.56 14 22 H 0.37 6.77 4.91 -40.82 -0.20 6.57 14 23 H 0.17 2.94 8.06 -52.49 -0.42 2.52 14 24 H 0.41 2.10 9.11 45.56 0.42 2.51 14 LS Contribution 236.66 15.07 3.57 3.57 Total: -1.00 -32.06 236.66 -3.57 -35.63 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -1.32 Total: 11.23 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.65 Total: 8.60 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.35 Total: -42.99 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.80 Total: -28.68 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -4.71 Total: 12.65 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.06 -3.57 -35.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574481108.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.700 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds