Wall clock time and date at job start Sun Mar 29 2020 21:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37102 * 119.99802 * 2 1 4 4 H 1.08002 * 120.00176 * 204.39759 * 3 2 1 5 5 C 1.38950 * 119.99674 * 24.40367 * 3 2 1 6 6 N 1.31412 * 120.00605 * 12.64906 * 5 3 2 7 7 Si 1.86809 * 119.99686 * 192.65505 * 5 3 2 8 8 H 1.48495 * 109.47150 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46983 * 120.00149 * 7 5 3 10 10 H 1.48500 * 109.46823 * 239.99599 * 7 5 3 11 11 C 1.34777 * 120.00467 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99969 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99668 * 359.97438 * 11 2 1 14 14 C 1.50700 * 109.47133 * 180.02562 * 13 11 2 15 15 N 1.30891 * 125.89592 * 305.02769 * 14 13 11 16 16 C 1.33641 * 109.77208 * 179.97438 * 15 14 13 17 17 N 1.39602 * 125.61045 * 180.02562 * 16 15 14 18 18 N 1.31201 * 108.78001 * 359.97438 * 16 15 14 19 19 N 1.34345 * 125.89309 * 124.99514 * 14 13 11 20 20 H 0.96991 * 126.76097 * 0.04952 * 19 14 13 21 21 H 1.09003 * 109.46439 * 265.85567 * 1 2 3 22 22 H 1.08992 * 109.47150 * 25.85600 * 1 2 3 23 23 H 1.09000 * 109.46736 * 145.86058 * 1 2 3 24 24 H 0.96997 * 120.00540 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47363 * 60.00280 * 13 11 2 26 26 H 1.09006 * 109.47178 * 299.99741 * 13 11 2 27 27 H 0.97003 * 119.99904 * 0.02562 * 17 16 15 28 28 H 0.97000 * 120.00010 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2292 -0.3863 5 6 1.5487 2.3369 0.4972 6 7 0.4347 2.2490 1.1886 7 14 2.3234 4.0074 0.1825 8 1 3.5642 3.8354 -0.6149 9 1 1.3679 4.8630 -0.5660 10 1 2.6540 4.6518 1.4790 11 6 2.1390 -1.1671 -0.0005 12 8 3.3519 -1.1670 -0.0010 13 6 1.3855 -2.4722 -0.0005 14 6 2.3649 -3.6176 -0.0005 15 7 3.3261 -3.8055 -0.8688 16 6 3.9989 -4.9194 -0.5646 17 7 5.0888 -5.4296 -1.2721 18 7 3.4672 -5.4540 0.5092 19 7 2.4023 -4.6219 0.8911 20 1 1.8104 -4.7475 1.6491 21 1 -0.3632 -0.0743 1.0250 22 1 -0.3633 0.9247 -0.4481 23 1 -0.3633 -0.8506 -0.5767 24 1 0.0144 3.0515 1.5354 25 1 0.7586 -2.5298 -0.8903 26 1 0.7592 -2.5302 0.8898 27 1 5.4172 -4.9653 -2.0579 28 1 5.5181 -6.2481 -0.9776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180247442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:14 Heat of formation + Delta-G solvation = 68.849238 kcal Electronic energy + Delta-G solvation = -15184.276156 eV Core-core repulsion = 12465.923268 eV Total energy + Delta-G solvation = -2718.352888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.61362 -38.37052 -34.81651 -34.46081 -31.99751 -31.54593 -30.78143 -28.01360 -26.15442 -24.30875 -21.74892 -20.78400 -18.92725 -17.72367 -16.86475 -16.26834 -15.96288 -15.43435 -15.04274 -14.60136 -14.20762 -14.11724 -13.14685 -12.45396 -12.22133 -11.67878 -11.43411 -11.27561 -11.23105 -10.99428 -10.88530 -10.31046 -10.25555 -9.50166 -9.32430 -9.01331 -8.43385 -8.03944 -7.65498 -6.32845 -3.88244 2.06443 2.89202 3.15957 3.26657 3.33928 3.50419 3.73162 3.87778 4.15393 4.76859 4.83722 5.10784 5.23811 5.69414 5.77979 5.83040 6.25861 6.31675 6.70704 6.81346 7.16384 7.35975 7.57864 7.61127 7.70488 8.14098 8.48964 8.75341 9.19565 9.40714 9.97171 10.72477 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.052166 B = 0.006504 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.623808 B = 4304.074411 C = 4665.551501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.448 5.448 3 C -0.301 4.301 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.455 3.545 12 O -0.563 6.563 13 C -0.062 4.062 14 C 0.342 3.658 15 N -0.539 5.539 16 C 0.473 3.527 17 N -0.828 5.828 18 N -0.383 5.383 19 N -0.488 5.488 20 H 0.436 0.564 21 H 0.052 0.948 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.266 0.734 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.413 0.587 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -9.770 -2.182 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.168 5.168 3 C -0.429 4.429 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.241 3.759 12 O -0.445 6.445 13 C -0.105 4.105 14 C 0.063 3.937 15 N -0.273 5.273 16 C 0.101 3.899 17 N -0.384 5.384 18 N -0.223 5.223 19 N -0.207 5.207 20 H 0.281 0.719 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.243 0.757 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.726 -10.014 -2.065 10.251 hybrid contribution -0.094 0.813 0.366 0.896 sum -0.820 -9.201 -1.700 9.393 Atomic orbital electron populations 1.21520 0.81260 1.00156 1.00570 1.43512 1.05384 1.04459 1.63435 1.19694 1.00671 0.83903 1.38669 0.88357 1.25333 0.96672 1.00111 0.95203 1.69986 1.19306 1.29503 1.33583 0.85871 0.79236 0.81481 0.78195 1.19189 1.20674 1.20823 1.19463 0.88046 0.83918 0.84511 1.90606 1.13431 1.86459 1.54038 1.20265 0.95215 0.89948 1.05055 1.23464 0.94155 0.90189 0.85937 1.70240 1.09413 1.17227 1.30417 1.20475 0.90613 0.89275 0.89569 1.40867 1.33062 1.31065 1.33431 1.77996 1.06537 1.19149 1.18617 1.47526 1.27323 1.19746 1.26131 0.71898 0.92947 0.90534 0.95545 0.92342 0.86843 0.87952 0.75650 0.76153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.27 8.45 59.85 0.51 2.77 15 2 N -0.45 -11.13 3.01 -122.19 -0.37 -11.50 15 3 C -0.30 -8.32 9.24 -14.93 -0.14 -8.46 15 4 H 0.10 2.88 7.45 -52.49 -0.39 2.49 15 5 C 0.03 0.77 5.04 -17.47 -0.09 0.68 15 6 N -0.88 -23.09 10.83 55.50 0.60 -22.49 15 7 Si 0.93 20.65 29.57 -169.99 -5.03 15.63 15 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 9 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 11 C 0.46 10.85 7.62 -10.99 -0.08 10.76 15 12 O -0.56 -15.85 15.27 5.55 0.08 -15.77 15 13 C -0.06 -1.06 4.93 -29.04 -0.14 -1.21 15 14 C 0.34 6.31 7.03 -155.72 -1.09 5.22 15 15 N -0.54 -11.04 10.56 -11.13 -0.12 -11.15 15 16 C 0.47 8.57 9.44 -321.19 -3.03 5.54 15 17 N -0.83 -11.03 9.13 29.99 0.27 -10.75 15 18 N -0.38 -6.77 12.82 29.99 0.38 -6.38 15 19 N -0.49 -7.80 7.43 32.62 0.24 -7.56 15 20 H 0.44 5.17 8.96 -182.35 -1.63 3.53 15 21 H 0.05 1.10 7.83 -51.93 -0.41 0.70 15 22 H 0.08 1.72 6.80 -51.93 -0.35 1.37 15 23 H 0.03 0.43 6.61 -51.93 -0.34 0.09 15 24 H 0.27 6.59 8.31 -40.82 -0.34 6.25 15 25 H 0.11 1.68 7.41 -51.93 -0.38 1.29 15 26 H 0.10 1.41 8.11 -51.93 -0.42 0.99 15 27 H 0.41 4.89 8.96 -40.82 -0.37 4.52 15 28 H 0.41 4.25 8.96 -40.82 -0.37 3.88 15 LS Contribution 251.08 15.07 3.78 3.78 Total: -1.00 -34.95 251.08 -8.01 -42.97 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.80 Total: 7.90 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: -4.07 Total: 15.32 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: 1.02 Total: -69.83 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.08 Total: -15.77 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.95 -8.01 -42.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180247442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.818 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds