Wall clock time and date at job start Sun Mar 29 2020 21:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37102 * 119.99802 * 2 1 4 4 H 1.08002 * 120.00176 * 204.39759 * 3 2 1 5 5 C 1.38950 * 119.99674 * 24.40367 * 3 2 1 6 6 N 1.31412 * 120.00605 * 12.64906 * 5 3 2 7 7 Si 1.86809 * 119.99686 * 192.65505 * 5 3 2 8 8 H 1.48495 * 109.47150 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46983 * 120.00149 * 7 5 3 10 10 H 1.48500 * 109.46823 * 239.99599 * 7 5 3 11 11 C 1.34777 * 120.00467 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99969 * 179.97438 * 11 2 1 13 13 C 1.50696 * 119.99668 * 359.97438 * 11 2 1 14 14 C 1.50700 * 109.47133 * 180.02562 * 13 11 2 15 15 N 1.30891 * 125.89592 * 305.02769 * 14 13 11 16 16 C 1.33641 * 109.77208 * 179.97438 * 15 14 13 17 17 N 1.39602 * 125.61045 * 180.02562 * 16 15 14 18 18 N 1.31201 * 108.78001 * 359.97438 * 16 15 14 19 19 N 1.34345 * 125.89309 * 124.99514 * 14 13 11 20 20 H 0.96991 * 126.76097 * 0.04952 * 19 14 13 21 21 H 1.09003 * 109.46439 * 265.85567 * 1 2 3 22 22 H 1.08992 * 109.47150 * 25.85600 * 1 2 3 23 23 H 1.09000 * 109.46736 * 145.86058 * 1 2 3 24 24 H 0.96997 * 120.00540 * 180.02562 * 6 5 3 25 25 H 1.08997 * 109.47363 * 60.00280 * 13 11 2 26 26 H 1.09006 * 109.47178 * 299.99741 * 13 11 2 27 27 H 0.97003 * 119.99904 * 0.02562 * 17 16 15 28 28 H 0.97000 * 120.00010 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1582 1.2292 -0.3863 5 6 1.5487 2.3369 0.4972 6 7 0.4347 2.2490 1.1886 7 14 2.3234 4.0074 0.1825 8 1 3.5642 3.8354 -0.6149 9 1 1.3679 4.8630 -0.5660 10 1 2.6540 4.6518 1.4790 11 6 2.1390 -1.1671 -0.0005 12 8 3.3519 -1.1670 -0.0010 13 6 1.3855 -2.4722 -0.0005 14 6 2.3649 -3.6176 -0.0005 15 7 3.3261 -3.8055 -0.8688 16 6 3.9989 -4.9194 -0.5646 17 7 5.0888 -5.4296 -1.2721 18 7 3.4672 -5.4540 0.5092 19 7 2.4023 -4.6219 0.8911 20 1 1.8104 -4.7475 1.6491 21 1 -0.3632 -0.0743 1.0250 22 1 -0.3633 0.9247 -0.4481 23 1 -0.3633 -0.8506 -0.5767 24 1 0.0144 3.0515 1.5354 25 1 0.7586 -2.5298 -0.8903 26 1 0.7592 -2.5302 0.8898 27 1 5.4172 -4.9653 -2.0579 28 1 5.5181 -6.2481 -0.9776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180247442.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:13 Heat of formation + Delta-G solvation = 43.360634 kcal Electronic energy + Delta-G solvation = -15185.381424 eV Core-core repulsion = 12465.923268 eV Total energy + Delta-G solvation = -2719.458157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.95319 -40.20275 -36.64119 -35.78082 -33.76101 -33.11323 -32.16696 -29.48240 -27.91565 -26.16108 -23.14037 -22.19833 -20.60310 -19.03397 -18.80849 -17.90984 -17.25265 -16.72786 -16.63101 -16.27590 -15.89016 -15.85328 -14.70752 -14.01975 -13.92919 -13.36905 -13.13958 -13.02752 -12.75147 -12.61394 -12.30039 -12.16171 -12.09806 -10.96130 -10.89366 -10.73158 -10.32138 -9.59268 -9.24963 -8.30652 -5.93948 0.70499 1.38047 1.43730 1.56568 1.69961 2.07272 2.14091 2.33044 2.52444 3.12501 3.16840 3.47930 3.87346 4.18434 4.44583 4.48783 4.79581 5.06433 5.13788 5.38264 5.47879 5.49933 6.13152 6.24942 6.43535 6.54423 6.64639 7.23118 7.51385 7.52007 8.09213 8.72241 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.052166 B = 0.006504 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.623808 B = 4304.074411 C = 4665.551501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.463 5.463 3 C -0.339 4.339 4 H 0.065 0.935 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.983 3.017 8 H -0.277 1.277 9 H -0.264 1.264 10 H -0.278 1.278 11 C 0.446 3.554 12 O -0.617 6.617 13 C -0.047 4.047 14 C 0.331 3.669 15 N -0.581 5.581 16 C 0.457 3.543 17 N -0.812 5.812 18 N -0.393 5.393 19 N -0.472 5.472 20 H 0.454 0.546 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.273 0.727 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.419 0.581 28 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -10.264 -2.022 10.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.182 5.182 3 C -0.467 4.467 4 H 0.083 0.917 5 C -0.201 4.201 6 N -0.532 5.532 7 Si 0.808 3.192 8 H -0.202 1.202 9 H -0.189 1.189 10 H -0.203 1.203 11 C 0.234 3.766 12 O -0.503 6.503 13 C -0.089 4.089 14 C 0.051 3.949 15 N -0.316 5.316 16 C 0.085 3.915 17 N -0.371 5.371 18 N -0.234 5.234 19 N -0.193 5.193 20 H 0.302 0.698 21 H 0.068 0.932 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.163 0.837 26 H 0.162 0.838 27 H 0.251 0.749 28 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.004 -10.535 -1.887 10.889 hybrid contribution 0.305 0.931 0.335 1.035 sum -1.699 -9.605 -1.552 9.876 Atomic orbital electron populations 1.21556 0.78900 1.01316 1.01085 1.43766 1.06913 1.04150 1.63418 1.19556 1.00283 0.86173 1.40707 0.91667 1.25971 0.97096 1.02565 0.94515 1.70035 1.19549 1.30572 1.33083 0.85023 0.78341 0.77781 0.78081 1.20212 1.18922 1.20348 1.20469 0.87866 0.85666 0.82638 1.90570 1.16111 1.87627 1.56008 1.20230 0.94641 0.85495 1.08531 1.23579 0.94222 0.90835 0.86234 1.70197 1.10737 1.18534 1.32116 1.20903 0.91533 0.89036 0.90025 1.40902 1.31745 1.31368 1.33080 1.77930 1.07066 1.19762 1.18654 1.47426 1.26939 1.18823 1.26102 0.69770 0.93220 0.92620 0.90499 0.91752 0.83700 0.83830 0.74884 0.74540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.54 8.45 127.77 1.08 5.62 15 2 N -0.46 -22.86 3.01 -658.90 -1.98 -24.85 15 3 C -0.34 -19.08 9.24 84.04 0.78 -18.30 15 4 H 0.07 4.01 7.45 -2.91 -0.02 3.99 15 5 C 0.00 0.02 5.04 84.93 0.43 0.45 15 6 N -0.89 -45.93 10.83 21.66 0.23 -45.70 15 7 Si 0.98 42.32 29.57 68.60 2.03 44.35 15 8 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 9 H -0.26 -10.63 7.11 99.48 0.71 -9.93 15 10 H -0.28 -11.71 7.11 99.48 0.71 -11.01 15 11 C 0.45 21.03 7.62 87.66 0.67 21.70 15 12 O -0.62 -35.50 15.27 -3.05 -0.05 -35.55 15 13 C -0.05 -1.48 4.93 29.10 0.14 -1.34 15 14 C 0.33 11.64 7.03 138.23 0.97 12.61 15 15 N -0.58 -23.35 10.56 -189.13 -2.00 -25.35 15 16 C 0.46 16.15 9.44 260.92 2.46 18.61 15 17 N -0.81 -20.83 9.13 -59.02 -0.54 -21.36 15 18 N -0.39 -13.31 12.82 -59.04 -0.76 -14.07 15 19 N -0.47 -14.08 7.43 -50.72 -0.38 -14.46 15 20 H 0.45 9.53 8.96 -213.11 -1.91 7.62 15 21 H 0.05 1.98 7.83 -2.39 -0.02 1.96 15 22 H 0.05 2.43 6.80 -2.39 -0.02 2.41 15 23 H 0.08 2.24 6.61 -2.39 -0.02 2.22 15 24 H 0.27 13.13 8.31 -92.71 -0.77 12.36 15 25 H 0.15 3.69 7.41 -2.39 -0.02 3.67 15 26 H 0.14 3.34 8.11 -2.38 -0.02 3.33 15 27 H 0.42 9.61 8.96 -92.71 -0.83 8.78 15 28 H 0.42 8.21 8.96 -92.71 -0.83 7.38 15 Total: -1.00 -77.16 251.08 0.76 -76.40 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -2.33 Total: 21.24 kcal Atomic # 6 Polarization: 32.82 SS G_CDS: 6.53 Total: 39.34 kcal Atomic # 7 Polarization: -140.36 SS G_CDS: -5.42 Total: -145.78 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.05 Total: -35.55 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -77.16 0.76 -76.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180247442.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.760 kcal (2) G-P(sol) polarization free energy of solvation -77.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds