Wall clock time and date at job start Sun Mar 29 2020 21:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99815 * 2 1 4 4 C 1.50700 * 109.47394 * 270.00215 * 3 2 1 5 5 H 1.08006 * 119.99676 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00311 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99838 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99895 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47217 * 60.00134 * 8 6 4 10 10 H 1.48501 * 109.46747 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47277 * 299.99601 * 8 6 4 12 12 C 1.34782 * 119.99908 * 180.02562 * 2 1 3 13 13 O 1.21274 * 119.99588 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99898 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46866 * 179.97438 * 14 12 2 16 16 N 1.28884 * 125.44630 * 90.00125 * 15 14 12 17 17 C 1.31040 * 107.91783 * 180.02562 * 16 15 14 18 18 N 1.33322 * 106.89561 * 359.97438 * 17 16 15 19 19 N 1.28776 * 125.45117 * 270.02229 * 15 14 12 20 20 H 1.09003 * 109.46706 * 269.99483 * 1 2 3 21 21 H 1.08990 * 109.47213 * 29.99737 * 1 2 3 22 22 H 1.09001 * 109.47273 * 150.00065 * 1 2 3 23 23 H 1.08999 * 109.47189 * 30.00093 * 3 2 1 24 24 H 1.08998 * 109.46971 * 150.00755 * 3 2 1 25 25 H 0.97006 * 119.99451 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47503 * 60.00340 * 14 12 2 27 27 H 1.08998 * 109.47118 * 300.00094 * 14 12 2 28 28 H 1.07994 * 126.55629 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6731 8 14 3.4374 3.4171 -3.4340 9 1 2.1395 3.5956 -4.1333 10 1 4.1800 4.7032 -3.4339 11 1 4.2391 2.3822 -4.1347 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0018 16 7 2.8239 -4.1544 1.0476 17 6 3.6361 -5.1036 0.6519 18 7 3.6253 -5.0920 -0.6813 19 7 2.8223 -4.1528 -1.0514 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1383 0.5137 25 1 4.0309 4.4436 -0.8505 26 1 0.7584 -2.5299 -0.8903 27 1 0.7591 -2.5302 0.8897 28 1 4.2053 -5.7684 1.2846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527487366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:11 Heat of formation + Delta-G solvation = 104.189546 kcal Electronic energy + Delta-G solvation = -15217.917972 eV Core-core repulsion = 12501.097554 eV Total energy + Delta-G solvation = -2716.820417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.15766 -39.30717 -35.25559 -34.69095 -32.94428 -32.69379 -29.61732 -27.63330 -25.96491 -23.81308 -23.65274 -22.27604 -19.25926 -17.80223 -17.25838 -16.67066 -15.95779 -15.74828 -15.10790 -14.88202 -14.21063 -13.68791 -13.16176 -12.97774 -12.41075 -12.16402 -12.08180 -11.80041 -11.31846 -11.00847 -10.94126 -10.83411 -10.66482 -10.44162 -10.25390 -9.77927 -9.25167 -8.51850 -7.92914 -6.13498 -4.19253 1.36037 1.95694 2.39694 2.94089 3.27791 3.32754 3.36211 3.59455 4.19830 4.37059 4.51116 4.63143 4.76627 5.03016 5.21630 5.37184 5.69642 5.81522 5.89048 6.00955 6.19237 6.80667 7.23104 7.31304 7.80990 8.05344 8.09985 8.51345 8.59823 8.85062 9.46342 10.94741 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.006862 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.684571 B = 4079.451370 C = 4389.038160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.591 5.591 3 C 0.247 3.753 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.494 3.506 13 O -0.521 6.521 14 C 0.107 3.893 15 N -0.118 5.118 16 N -0.303 5.303 17 C 0.138 3.862 18 N -0.292 5.292 19 N -0.049 5.049 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.265 0.735 26 H 0.141 0.859 27 H 0.139 0.861 28 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.148 -11.502 3.421 14.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.324 5.324 3 C 0.128 3.872 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.277 3.723 13 O -0.397 6.397 14 C -0.018 4.018 15 N -0.030 5.030 16 N -0.153 5.153 17 C -0.165 4.165 18 N -0.163 5.163 19 N -0.043 5.043 20 H 0.071 0.929 21 H 0.101 0.899 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.159 0.841 27 H 0.157 0.843 28 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -7.649 -11.002 2.925 13.715 hybrid contribution 0.353 0.248 -0.426 0.607 sum -7.296 -10.754 2.499 13.234 Atomic orbital electron populations 1.21801 0.80785 1.03231 1.01100 1.48139 1.06511 1.07214 1.70523 1.19397 0.92624 0.77281 0.97902 1.21356 1.37211 1.06579 0.92029 0.92335 1.24933 0.95102 0.96286 0.97643 1.69917 1.37987 1.14356 1.30923 0.86524 0.78462 0.77900 0.84374 1.20128 1.21093 1.20068 1.19923 0.88339 0.84651 0.79434 1.90787 1.13256 1.86429 1.49200 1.22243 0.89147 0.82193 1.08184 1.49561 1.29225 1.23320 1.00897 1.74661 1.14255 1.10419 1.15963 1.27272 0.99482 0.98211 0.91509 1.75842 1.14635 1.13922 1.11875 1.78986 1.07218 1.03932 1.14139 0.92902 0.89860 0.92375 0.94372 0.93690 0.92500 0.84116 0.84343 0.75020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 10.24 59.85 0.61 1.58 15 2 N -0.59 -11.42 2.86 -182.96 -0.52 -11.94 15 3 C 0.25 6.16 5.16 -5.20 -0.03 6.13 15 4 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 15 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 7 N -0.89 -26.11 13.29 55.43 0.74 -25.37 15 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 12 C 0.49 9.63 7.74 -10.98 -0.09 9.55 15 13 O -0.52 -13.12 16.01 5.56 0.09 -13.03 15 14 C 0.11 1.43 5.64 -5.19 -0.03 1.40 15 15 N -0.12 -1.92 3.49 -11.72 -0.04 -1.96 15 16 N -0.30 -4.75 12.13 29.34 0.36 -4.39 15 17 C 0.14 1.92 13.26 -91.58 -1.21 0.70 15 18 N -0.29 -4.86 12.50 29.33 0.37 -4.49 15 19 N -0.05 -0.87 13.25 60.35 0.80 -0.07 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.08 1.14 8.07 -51.93 -0.42 0.72 15 22 H 0.06 0.53 6.44 -51.93 -0.33 0.20 15 23 H 0.04 0.95 8.07 -51.93 -0.42 0.53 15 24 H 0.05 1.29 7.42 -51.93 -0.39 0.90 15 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.14 1.42 7.40 -51.93 -0.38 1.04 15 27 H 0.14 1.31 8.11 -51.93 -0.42 0.88 15 28 H 0.23 1.97 8.06 -52.49 -0.42 1.54 15 LS Contribution 259.10 15.07 3.90 3.90 Total: -1.00 -35.96 259.10 -3.25 -39.21 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -2.75 Total: -4.47 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.16 Total: 6.02 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 1.70 Total: -48.22 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.96 -3.25 -39.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527487366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.399 kcal (2) G-P(sol) polarization free energy of solvation -35.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds