Wall clock time and date at job start Sun Mar 29 2020 21:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 119.99815 * 2 1 4 4 C 1.50700 * 109.47394 * 270.00215 * 3 2 1 5 5 H 1.08006 * 119.99676 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00311 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99838 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99895 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47217 * 60.00134 * 8 6 4 10 10 H 1.48501 * 109.46747 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47277 * 299.99601 * 8 6 4 12 12 C 1.34782 * 119.99908 * 180.02562 * 2 1 3 13 13 O 1.21274 * 119.99588 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99898 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46866 * 179.97438 * 14 12 2 16 16 N 1.28884 * 125.44630 * 90.00125 * 15 14 12 17 17 C 1.31040 * 107.91783 * 180.02562 * 16 15 14 18 18 N 1.33322 * 106.89561 * 359.97438 * 17 16 15 19 19 N 1.28776 * 125.45117 * 270.02229 * 15 14 12 20 20 H 1.09003 * 109.46706 * 269.99483 * 1 2 3 21 21 H 1.08990 * 109.47213 * 29.99737 * 1 2 3 22 22 H 1.09001 * 109.47273 * 150.00065 * 1 2 3 23 23 H 1.08999 * 109.47189 * 30.00093 * 3 2 1 24 24 H 1.08998 * 109.46971 * 150.00755 * 3 2 1 25 25 H 0.97006 * 119.99451 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.47503 * 60.00340 * 14 12 2 27 27 H 1.08998 * 109.47118 * 300.00094 * 14 12 2 28 28 H 1.07994 * 126.55629 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5541 3.6176 -0.6731 8 14 3.4374 3.4171 -3.4340 9 1 2.1395 3.5956 -4.1333 10 1 4.1800 4.7032 -3.4339 11 1 4.2391 2.3822 -4.1347 12 6 2.1389 -1.1673 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3374 -3.5858 -0.0018 16 7 2.8239 -4.1544 1.0476 17 6 3.6361 -5.1036 0.6519 18 7 3.6253 -5.0920 -0.6813 19 7 2.8223 -4.1528 -1.0514 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0283 0.5138 24 1 3.1499 1.1383 0.5137 25 1 4.0309 4.4436 -0.8505 26 1 0.7584 -2.5299 -0.8903 27 1 0.7591 -2.5302 0.8897 28 1 4.2053 -5.7684 1.2846 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527487366.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:10 Heat of formation + Delta-G solvation = 76.720789 kcal Electronic energy + Delta-G solvation = -15219.109106 eV Core-core repulsion = 12501.097554 eV Total energy + Delta-G solvation = -2718.011552 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 225.097 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.32589 -40.83988 -36.84314 -35.96794 -34.77693 -34.07515 -31.07077 -29.23198 -27.35649 -25.38417 -24.93604 -23.75448 -20.71399 -19.00670 -18.72369 -18.58624 -17.35419 -17.04986 -16.78225 -16.21669 -15.87879 -14.93027 -14.56212 -14.50317 -13.86406 -13.60787 -13.51790 -13.17201 -12.95958 -12.80946 -12.57164 -12.24424 -12.18876 -12.03176 -11.76783 -11.65293 -10.78578 -10.67130 -9.56604 -8.26462 -6.40877 0.12948 0.87651 1.28725 1.35394 1.39804 1.45816 1.52040 2.17235 2.38058 3.04412 3.19646 3.35493 3.50328 3.86591 4.01617 4.40828 4.72941 4.75143 4.81200 4.91396 4.99948 5.10834 5.17886 5.47373 5.73959 5.99919 6.51626 6.68455 7.12313 7.31529 7.33241 8.80738 Molecular weight = 225.10amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.006862 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.684571 B = 4079.451370 C = 4389.038160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.595 5.595 3 C 0.260 3.740 4 C -0.546 4.546 5 H 0.057 0.943 6 C 0.009 3.991 7 N -0.928 5.928 8 Si 0.965 3.035 9 H -0.256 1.256 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.485 3.515 13 O -0.592 6.592 14 C 0.115 3.885 15 N -0.122 5.122 16 N -0.317 5.317 17 C 0.147 3.853 18 N -0.314 5.314 19 N -0.075 5.075 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.034 0.966 24 H -0.005 1.005 25 H 0.267 0.733 26 H 0.181 0.819 27 H 0.187 0.813 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -12.680 3.029 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.326 5.326 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.180 1.180 10 H -0.205 1.205 11 H -0.207 1.207 12 C 0.271 3.729 13 O -0.473 6.473 14 C -0.007 4.007 15 N -0.035 5.035 16 N -0.167 5.167 17 C -0.156 4.156 18 N -0.184 5.184 19 N -0.069 5.069 20 H 0.102 0.898 21 H 0.091 0.909 22 H 0.124 0.876 23 H 0.052 0.948 24 H 0.013 0.987 25 H 0.076 0.924 26 H 0.198 0.802 27 H 0.204 0.796 28 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -9.575 -12.195 2.533 15.710 hybrid contribution 0.927 0.591 -0.227 1.123 sum -8.649 -11.603 2.306 14.654 Atomic orbital electron populations 1.22219 0.76509 1.05151 1.03782 1.48095 1.09056 1.05501 1.69939 1.18822 0.91211 0.80012 0.96123 1.21687 1.37074 1.06610 0.93082 0.92516 1.25835 0.94872 0.96511 1.01843 1.70035 1.38787 1.14827 1.33069 0.85502 0.78993 0.77241 0.79310 1.18041 1.20462 1.20729 1.20920 0.87885 0.86488 0.77599 1.90751 1.16581 1.87713 1.52265 1.22511 0.87988 0.77809 1.12431 1.49809 1.29416 1.23588 1.00683 1.74657 1.14957 1.10989 1.16117 1.28214 0.98542 0.97793 0.91041 1.75808 1.14957 1.14265 1.13388 1.78930 1.08123 1.04775 1.15095 0.89788 0.90895 0.87577 0.94800 0.98668 0.92365 0.80175 0.79591 0.70614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.46 10.24 127.77 1.31 2.77 15 2 N -0.59 -22.50 2.86 -851.15 -2.43 -24.93 15 3 C 0.26 13.37 5.16 85.63 0.44 13.81 15 4 C -0.55 -30.58 9.39 25.60 0.24 -30.34 15 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 15 6 C 0.01 0.49 5.46 84.65 0.46 0.96 15 7 N -0.93 -55.49 13.29 21.45 0.28 -55.21 15 8 Si 0.97 44.48 29.54 68.60 2.03 46.51 15 9 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 12 C 0.49 18.55 7.74 87.66 0.68 19.23 15 13 O -0.59 -30.68 16.01 -3.01 -0.05 -30.72 15 14 C 0.12 2.71 5.64 85.63 0.48 3.20 15 15 N -0.12 -3.74 3.49 -190.99 -0.67 -4.40 15 16 N -0.32 -9.32 12.13 -61.09 -0.74 -10.06 15 17 C 0.15 3.77 13.26 180.68 2.40 6.16 15 18 N -0.31 -10.07 12.50 -61.11 -0.76 -10.84 15 19 N -0.08 -2.59 13.25 37.02 0.49 -2.10 15 20 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.07 1.84 8.07 -2.39 -0.02 1.82 15 22 H 0.11 1.39 6.44 -2.39 -0.02 1.37 15 23 H 0.03 1.74 8.07 -2.39 -0.02 1.73 15 24 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 15 25 H 0.27 15.08 8.31 -92.70 -0.77 14.31 15 26 H 0.18 2.79 7.40 -2.39 -0.02 2.77 15 27 H 0.19 2.57 8.11 -2.39 -0.02 2.55 15 28 H 0.28 3.83 8.06 -2.91 -0.02 3.81 15 Total: -1.00 -83.25 259.10 5.34 -77.91 By element: Atomic # 1 Polarization: -3.13 SS G_CDS: 1.18 Total: -1.95 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.01 Total: 15.78 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.83 Total: -107.53 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -83.25 5.34 -77.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527487366.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.631 kcal (2) G-P(sol) polarization free energy of solvation -83.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds