Wall clock time and date at job start Sun Mar 29 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46968 * 2 1 4 4 C 1.36932 * 120.00292 * 272.96752 * 3 2 1 5 5 H 1.08002 * 119.99593 * 194.37119 * 4 3 2 6 6 C 1.38804 * 120.00464 * 14.08963 * 4 3 2 7 7 N 1.31625 * 119.99450 * 357.11668 * 6 4 3 8 8 Si 1.86799 * 120.00400 * 177.10906 * 6 4 3 9 9 H 1.48498 * 109.47047 * 90.00435 * 8 6 4 10 10 H 1.48501 * 109.47211 * 210.00349 * 8 6 4 11 11 H 1.48501 * 109.46930 * 330.00408 * 8 6 4 12 12 C 1.46508 * 119.99430 * 92.95946 * 3 2 1 13 13 H 1.08998 * 109.46821 * 186.30193 * 12 3 2 14 14 C 1.52997 * 109.47124 * 306.30498 * 12 3 2 15 15 C 1.50704 * 109.46820 * 66.30793 * 12 3 2 16 16 N 1.29941 * 126.28483 * 317.16938 * 15 12 3 17 17 O 1.21304 * 110.25051 * 179.84595 * 16 15 12 18 18 C 1.33643 * 109.80761 * 0.42518 * 17 16 15 19 19 C 1.50705 * 126.55021 * 179.71627 * 18 17 16 20 20 N 1.31130 * 106.89759 * 359.73692 * 18 17 16 21 21 H 1.09005 * 109.46783 * 182.94664 * 1 2 3 22 22 H 1.08990 * 109.47280 * 302.94887 * 1 2 3 23 23 H 1.09000 * 109.47431 * 62.95298 * 1 2 3 24 24 H 1.09002 * 109.46889 * 240.00859 * 2 1 3 25 25 H 1.09000 * 109.47429 * 120.00503 * 2 1 3 26 26 H 0.97004 * 119.99493 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47095 * 60.00449 * 14 12 3 28 28 H 1.08999 * 109.46743 * 180.02562 * 14 12 3 29 29 H 1.08993 * 109.47245 * 299.99547 * 14 12 3 30 30 H 1.08999 * 109.46638 * 270.02463 * 19 18 17 31 31 H 1.09002 * 109.46925 * 30.02783 * 19 18 17 32 32 H 1.09002 * 109.46752 * 150.02651 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1887 2.0473 -1.1842 5 1 2.7581 2.9646 -1.2107 6 6 1.6345 1.5405 -2.3516 7 7 0.9938 0.3909 -2.3307 8 14 1.7978 2.4898 -3.9520 9 1 3.0379 2.0695 -4.6526 10 1 0.6225 2.2104 -4.8156 11 1 1.8630 3.9444 -3.6602 12 6 2.3242 2.0499 1.2672 13 1 2.5638 3.0962 1.0772 14 6 1.1104 1.9649 2.1947 15 6 3.5032 1.3750 1.9195 16 7 3.7054 0.0943 2.0055 17 8 4.7468 -0.1283 2.5864 18 6 5.3207 1.0242 2.9448 19 6 6.6206 1.1858 3.6900 20 7 4.5364 1.9874 2.5246 21 1 -0.3633 -1.0264 0.0528 22 1 -0.3633 0.5589 0.8623 23 1 -0.3634 0.4673 -0.9153 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.6068 0.0365 -3.1466 27 1 0.8709 0.9187 2.3846 28 1 1.3379 2.4628 3.1372 29 1 0.2577 2.4531 1.7229 30 1 6.4253 1.2001 4.7623 31 1 7.2818 0.3526 3.4521 32 1 7.0947 2.1218 3.3946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559512369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:38 Heat of formation + Delta-G solvation = 102.766840 kcal Electronic energy + Delta-G solvation = -16131.272223 eV Core-core repulsion = 13517.930456 eV Total energy + Delta-G solvation = -2613.341767 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.96317 -36.99990 -35.10663 -33.25547 -31.65528 -29.63655 -28.59065 -28.43963 -24.53868 -23.37785 -22.65920 -21.09404 -19.34971 -17.58532 -16.83477 -16.76566 -15.24274 -14.37448 -14.09667 -13.69843 -13.38499 -13.18919 -12.96944 -12.20181 -12.03089 -11.86058 -11.59361 -11.32408 -10.89421 -10.83813 -10.69378 -10.62334 -10.38946 -10.36908 -9.92089 -9.56064 -9.32974 -9.21861 -8.30030 -6.87496 -5.62081 -3.16984 1.71461 2.89278 3.31028 3.38140 3.44161 3.45829 4.14591 4.49032 4.78613 5.27185 5.29469 5.32176 5.41619 5.58056 5.76064 6.02471 6.05380 6.28911 6.37227 6.55782 6.66252 6.88503 6.91037 7.11070 7.27437 7.40247 7.67604 7.98113 8.31416 8.48469 8.84889 9.28623 9.84134 10.28205 11.28941 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.033601 B = 0.008668 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.116363 B = 3229.675508 C = 3555.160637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.165 3.835 3 N -0.582 5.582 4 C -0.249 4.249 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.901 5.901 8 Si 0.912 3.088 9 H -0.290 1.290 10 H -0.289 1.289 11 H -0.281 1.281 12 C 0.253 3.747 13 H 0.091 0.909 14 C -0.150 4.150 15 C 0.175 3.825 16 N -0.368 5.368 17 O 0.062 5.938 18 C 0.147 3.853 19 C -0.054 4.054 20 N -0.485 5.485 21 H 0.013 0.987 22 H 0.010 0.990 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.016 0.984 26 H 0.250 0.750 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 0.953 10.424 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 N -0.302 5.302 4 C -0.378 4.378 5 H 0.091 0.909 6 C -0.200 4.200 7 N -0.548 5.548 8 Si 0.743 3.257 9 H -0.217 1.217 10 H -0.215 1.215 11 H -0.206 1.206 12 C 0.140 3.860 13 H 0.109 0.891 14 C -0.210 4.210 15 C -0.102 4.102 16 N -0.077 5.077 17 O 0.006 5.994 18 C -0.074 4.074 19 C -0.112 4.112 20 N -0.221 5.221 21 H 0.032 0.968 22 H 0.029 0.971 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.070 0.674 9.840 11.581 hybrid contribution 0.244 0.359 -0.792 0.903 sum 6.314 1.033 9.048 11.081 Atomic orbital electron populations 1.22687 0.99155 0.97486 1.01479 1.20998 0.92444 0.83499 0.98986 1.44248 1.74713 1.11790 0.99478 1.19383 1.27378 1.05659 0.85333 0.90905 1.24900 0.99165 0.97691 0.98291 1.70226 1.40163 1.18604 1.25812 0.86123 0.77066 0.79281 0.83273 1.21687 1.21543 1.20624 1.18689 0.86065 0.94994 0.86227 0.89143 1.22283 0.98677 1.01983 0.98050 1.27762 0.98574 0.86757 0.97062 1.74689 0.99622 1.19299 1.14115 1.85301 1.26529 1.34629 1.52984 1.28693 0.99171 0.81252 0.98305 1.20223 0.87295 1.04914 0.98802 1.71860 1.04050 1.31018 1.15134 0.96780 0.97058 0.88896 0.88778 0.96625 0.93909 0.92494 0.93800 0.91244 0.88795 0.89060 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.33 37.16 0.35 -3.33 16 2 C 0.16 4.27 4.70 -4.04 -0.02 4.25 16 3 N -0.58 -15.03 2.43 -166.97 -0.41 -15.43 16 4 C -0.25 -6.87 9.73 -15.06 -0.15 -7.02 16 5 H 0.07 1.97 7.75 -52.49 -0.41 1.56 16 6 C 0.00 -0.12 5.37 -17.43 -0.09 -0.22 16 7 N -0.90 -25.48 7.18 55.49 0.40 -25.08 16 8 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.25 5.62 3.25 -69.08 -0.22 5.40 16 13 H 0.09 1.98 7.84 -51.93 -0.41 1.58 16 14 C -0.15 -2.92 7.93 37.16 0.29 -2.63 16 15 C 0.17 3.74 7.01 -156.38 -1.10 2.65 16 16 N -0.37 -7.93 9.97 30.90 0.31 -7.62 16 17 O 0.06 1.11 11.31 18.10 0.20 1.32 16 18 C 0.15 2.27 8.51 -13.05 -0.11 2.16 16 19 C -0.05 -0.47 10.51 36.01 0.38 -0.09 16 20 N -0.48 -9.20 11.55 -9.87 -0.11 -9.31 16 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 22 H 0.01 0.24 5.69 -51.93 -0.30 -0.05 16 23 H 0.09 2.53 5.81 -51.93 -0.30 2.23 16 24 H 0.09 2.74 5.96 -51.93 -0.31 2.44 16 25 H 0.02 0.40 5.88 -51.93 -0.31 0.09 16 26 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.06 1.15 6.56 -51.93 -0.34 0.81 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 261.99 15.07 3.95 3.95 Total: -1.00 -31.09 261.99 -5.38 -36.47 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -4.02 Total: -2.37 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.67 Total: 1.18 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.19 Total: -57.45 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.09 -5.38 -36.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.233 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds