Wall clock time and date at job start Sun Mar 29 2020 22:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46968 * 2 1 4 4 C 1.36932 * 120.00292 * 272.96752 * 3 2 1 5 5 H 1.08002 * 119.99593 * 194.37119 * 4 3 2 6 6 C 1.38804 * 120.00464 * 14.08963 * 4 3 2 7 7 N 1.31625 * 119.99450 * 357.11668 * 6 4 3 8 8 Si 1.86799 * 120.00400 * 177.10906 * 6 4 3 9 9 H 1.48498 * 109.47047 * 90.00435 * 8 6 4 10 10 H 1.48501 * 109.47211 * 210.00349 * 8 6 4 11 11 H 1.48501 * 109.46930 * 330.00408 * 8 6 4 12 12 C 1.46508 * 119.99430 * 92.95946 * 3 2 1 13 13 H 1.08998 * 109.46821 * 186.30193 * 12 3 2 14 14 C 1.52997 * 109.47124 * 306.30498 * 12 3 2 15 15 C 1.50704 * 109.46820 * 66.30793 * 12 3 2 16 16 N 1.29941 * 126.28483 * 317.16938 * 15 12 3 17 17 O 1.21304 * 110.25051 * 179.84595 * 16 15 12 18 18 C 1.33643 * 109.80761 * 0.42518 * 17 16 15 19 19 C 1.50705 * 126.55021 * 179.71627 * 18 17 16 20 20 N 1.31130 * 106.89759 * 359.73692 * 18 17 16 21 21 H 1.09005 * 109.46783 * 182.94664 * 1 2 3 22 22 H 1.08990 * 109.47280 * 302.94887 * 1 2 3 23 23 H 1.09000 * 109.47431 * 62.95298 * 1 2 3 24 24 H 1.09002 * 109.46889 * 240.00859 * 2 1 3 25 25 H 1.09000 * 109.47429 * 120.00503 * 2 1 3 26 26 H 0.97004 * 119.99493 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47095 * 60.00449 * 14 12 3 28 28 H 1.08999 * 109.46743 * 180.02562 * 14 12 3 29 29 H 1.08993 * 109.47245 * 299.99547 * 14 12 3 30 30 H 1.08999 * 109.46638 * 270.02463 * 19 18 17 31 31 H 1.09002 * 109.46925 * 30.02783 * 19 18 17 32 32 H 1.09002 * 109.46752 * 150.02651 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1887 2.0473 -1.1842 5 1 2.7581 2.9646 -1.2107 6 6 1.6345 1.5405 -2.3516 7 7 0.9938 0.3909 -2.3307 8 14 1.7978 2.4898 -3.9520 9 1 3.0379 2.0695 -4.6526 10 1 0.6225 2.2104 -4.8156 11 1 1.8630 3.9444 -3.6602 12 6 2.3242 2.0499 1.2672 13 1 2.5638 3.0962 1.0772 14 6 1.1104 1.9649 2.1947 15 6 3.5032 1.3750 1.9195 16 7 3.7054 0.0943 2.0055 17 8 4.7468 -0.1283 2.5864 18 6 5.3207 1.0242 2.9448 19 6 6.6206 1.1858 3.6900 20 7 4.5364 1.9874 2.5246 21 1 -0.3633 -1.0264 0.0528 22 1 -0.3633 0.5589 0.8623 23 1 -0.3634 0.4673 -0.9153 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 0.6068 0.0365 -3.1466 27 1 0.8709 0.9187 2.3846 28 1 1.3379 2.4628 3.1372 29 1 0.2577 2.4531 1.7229 30 1 6.4253 1.2001 4.7623 31 1 7.2818 0.3526 3.4521 32 1 7.0947 2.1218 3.3946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559512369.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:38 Heat of formation + Delta-G solvation = 81.677428 kcal Electronic energy + Delta-G solvation = -16132.186728 eV Core-core repulsion = 13517.930456 eV Total energy + Delta-G solvation = -2614.256273 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 225.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.44468 -38.82721 -36.63722 -34.80201 -33.32802 -31.58617 -30.46604 -29.54960 -26.32891 -25.19964 -24.19120 -22.88711 -21.02333 -19.05799 -18.83947 -18.26411 -17.19178 -15.87383 -15.73920 -15.36105 -15.10696 -14.09919 -13.98655 -13.95898 -13.86210 -13.59330 -13.18086 -12.87499 -12.73240 -12.62089 -12.47477 -12.35642 -12.18990 -11.97269 -11.80799 -11.54235 -11.31674 -10.67786 -10.37687 -8.90128 -7.70826 -5.27424 0.39234 1.36932 1.46875 1.47748 1.56904 2.15308 2.46586 2.84150 3.21448 3.37659 3.67997 4.07647 4.37897 4.41705 4.65365 4.70183 4.72293 4.75050 4.90683 5.00970 5.12459 5.14217 5.20389 5.24649 5.34273 5.41938 5.54153 5.87715 6.26070 6.38536 7.18971 7.42742 7.83016 8.23926 9.18757 Molecular weight = 225.12amu Principal moments of inertia in cm(-1) A = 0.033601 B = 0.008668 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.116363 B = 3229.675508 C = 3555.160637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.178 3.822 3 N -0.597 5.597 4 C -0.265 4.265 5 H 0.072 0.928 6 C -0.052 4.052 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.292 1.292 10 H -0.291 1.291 11 H -0.272 1.272 12 C 0.248 3.752 13 H 0.087 0.913 14 C -0.137 4.137 15 C 0.157 3.843 16 N -0.400 5.400 17 O 0.063 5.937 18 C 0.169 3.831 19 C -0.053 4.053 20 N -0.511 5.511 21 H 0.023 0.977 22 H 0.025 0.975 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.020 0.980 26 H 0.245 0.755 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 1.567 11.735 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 N -0.318 5.318 4 C -0.394 4.394 5 H 0.090 0.910 6 C -0.246 4.246 7 N -0.567 5.567 8 Si 0.803 3.197 9 H -0.219 1.219 10 H -0.217 1.217 11 H -0.197 1.197 12 C 0.137 3.863 13 H 0.105 0.895 14 C -0.196 4.196 15 C -0.118 4.118 16 N -0.110 5.110 17 O 0.006 5.994 18 C -0.051 4.051 19 C -0.111 4.111 20 N -0.246 5.246 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.369 1.313 11.187 13.460 hybrid contribution -0.001 0.161 -1.077 1.089 sum 7.368 1.474 10.110 12.597 Atomic orbital electron populations 1.22494 0.98343 0.98006 1.00722 1.20698 0.92985 0.83722 0.97268 1.44321 1.75425 1.11730 1.00340 1.19632 1.27491 1.05794 0.86483 0.91017 1.25615 0.99294 0.98607 1.01075 1.70430 1.40665 1.19547 1.26045 0.85156 0.76521 0.78465 0.79528 1.21886 1.21670 1.19662 1.18809 0.87427 0.94541 0.85498 0.89516 1.22120 0.97309 1.01607 0.98599 1.27439 0.99113 0.87095 0.98186 1.74645 1.01314 1.19585 1.15415 1.85246 1.25828 1.35475 1.52836 1.30011 0.99766 0.79499 0.95862 1.20707 0.84106 1.06728 0.99565 1.71841 1.04293 1.31917 1.16530 0.95821 0.95597 0.91391 0.92406 0.96200 0.94459 0.93453 0.91117 0.91467 0.85716 0.86296 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.78 9.33 71.98 0.67 -6.11 16 2 C 0.18 9.38 4.70 86.38 0.41 9.79 16 3 N -0.60 -31.20 2.43 -682.19 -1.66 -32.86 16 4 C -0.26 -14.82 9.73 84.03 0.82 -14.00 16 5 H 0.07 3.92 7.75 -2.91 -0.02 3.90 16 6 C -0.05 -2.90 5.37 84.86 0.46 -2.45 16 7 N -0.92 -53.07 7.18 21.65 0.16 -52.91 16 8 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 C 0.25 11.02 3.25 44.24 0.14 11.16 16 13 H 0.09 3.83 7.84 -2.39 -0.02 3.81 16 14 C -0.14 -5.21 7.93 71.98 0.57 -4.64 16 15 C 0.16 6.67 7.01 138.47 0.97 7.64 16 16 N -0.40 -17.06 9.97 -60.33 -0.60 -17.66 16 17 O 0.06 2.18 11.31 74.83 0.85 3.03 16 18 C 0.17 4.81 8.51 88.38 0.75 5.56 16 19 C -0.05 -0.69 10.51 71.24 0.75 0.06 16 20 N -0.51 -18.65 11.55 -303.20 -3.50 -22.15 16 21 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 22 H 0.03 1.16 5.69 -2.39 -0.01 1.15 16 23 H 0.07 3.76 5.81 -2.39 -0.01 3.75 16 24 H 0.06 3.48 5.96 -2.39 -0.01 3.46 16 25 H 0.02 1.02 5.88 -2.39 -0.01 1.01 16 26 H 0.25 13.81 8.31 -92.70 -0.77 13.04 16 27 H 0.05 1.87 6.56 -2.39 -0.02 1.86 16 28 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.07 2.55 7.83 -2.39 -0.02 2.53 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.10 261.99 3.92 -64.18 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.12 Total: 3.81 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 5.54 Total: 7.01 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -5.61 Total: -125.58 kcal Atomic # 8 Polarization: 2.18 SS G_CDS: 0.85 Total: 3.03 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.10 3.92 -64.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559512369.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.853 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds