Wall clock time and date at job start Sun Mar 29 2020 21:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47101 * 270.00204 * 3 2 1 5 5 H 1.48504 * 109.46994 * 29.99981 * 3 2 1 6 6 H 1.48493 * 109.47105 * 149.99903 * 3 2 1 7 7 C 1.37877 * 120.00508 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99345 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00384 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47155 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47094 * 179.97438 * 10 9 7 12 12 C 1.34774 * 119.99881 * 179.97438 * 11 10 9 13 13 O 1.21285 * 120.00019 * 0.02562 * 12 11 10 14 14 C 1.50699 * 119.99942 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47078 * 59.99862 * 14 12 11 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47083 * 179.97438 * 14 12 11 20 20 H 0.96999 * 120.00080 * 0.02562 * 1 2 3 21 21 H 1.08992 * 109.47396 * 60.00132 * 9 7 2 22 22 H 1.09002 * 109.46959 * 299.99936 * 9 7 2 23 23 H 1.09000 * 109.47360 * 59.99681 * 10 9 7 24 24 H 1.09002 * 109.46935 * 299.99706 * 10 9 7 25 25 H 0.96998 * 119.99994 * 359.97438 * 11 10 9 26 26 H 1.09002 * 109.46959 * 299.99950 * 14 12 11 27 27 H 1.08996 * 109.47853 * 300.00179 * 15 14 12 28 28 H 1.09002 * 109.47153 * 60.00207 * 15 14 12 29 29 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 30 30 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 31 31 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 32 32 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 33 33 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 35 35 H 1.08992 * 109.47399 * 299.99938 * 19 14 12 36 36 H 1.09004 * 109.46724 * 60.00424 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 7 5.4867 -2.6364 0.0009 12 6 6.1605 -3.8036 0.0014 13 8 5.5541 -4.8540 0.0013 14 6 7.6675 -3.8036 0.0019 15 6 8.1771 -3.0821 1.2512 16 6 9.7070 -3.0826 1.2521 17 6 10.2166 -4.5253 1.2527 18 6 9.7071 -5.2468 0.0034 19 6 8.1776 -5.2461 0.0029 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.6800 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 3.6587 -3.1502 -0.8892 24 1 3.6580 -3.1505 0.8908 25 1 5.9716 -1.7964 0.0006 26 1 8.0311 -3.2899 -0.8881 27 1 7.8138 -2.0545 1.2510 28 1 7.8134 -3.5958 2.1411 29 1 10.0701 -2.5690 2.1423 30 1 10.0710 -2.5691 0.3621 31 1 9.8526 -5.0388 2.1427 32 1 11.3066 -4.5256 1.2529 33 1 10.0705 -6.2743 0.0037 34 1 10.0710 -4.7332 -0.8865 35 1 7.8140 -5.7594 0.8930 36 1 7.8146 -5.7604 -0.8870 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138080.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:11 Heat of formation + Delta-G solvation = -100.052926 kcal Electronic energy + Delta-G solvation = -15448.862302 eV Core-core repulsion = 12930.265953 eV Total energy + Delta-G solvation = -2518.596349 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15650 -38.56410 -36.64369 -34.82064 -32.68692 -31.63192 -31.29607 -27.00726 -24.38549 -23.41741 -22.60572 -21.40983 -20.53897 -19.00456 -18.10910 -16.88241 -16.58027 -16.22793 -15.83841 -15.28047 -15.03580 -14.99161 -14.62712 -14.45562 -13.62991 -13.37365 -13.25980 -13.05098 -13.02598 -12.27359 -12.18470 -12.12039 -12.01310 -11.76852 -11.57349 -11.48348 -11.32117 -10.98046 -10.79821 -10.61087 -10.04961 -8.31086 -6.38860 1.38633 1.41566 1.52870 1.65740 2.29381 2.36340 3.03967 3.64818 3.77472 3.81985 4.24244 4.30019 4.32107 4.40373 4.41644 4.47286 4.59083 4.62485 4.72709 4.73950 4.99550 5.13842 5.15619 5.20156 5.27737 5.28532 5.38070 5.38590 5.41666 5.43927 5.58507 5.64286 6.20919 6.61488 6.70184 7.25770 7.30424 8.85902 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.048633 B = 0.005153 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.607984 B = 5432.485353 C = 5873.332162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.542 4.542 8 H 0.026 0.974 9 C -0.011 4.011 10 C 0.143 3.857 11 N -0.716 5.716 12 C 0.504 3.496 13 O -0.595 6.595 14 C -0.096 4.096 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.099 4.099 20 H 0.268 0.732 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.413 0.587 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.930 -2.746 1.170 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.580 4.580 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.019 3.981 11 N -0.367 5.367 12 C 0.292 3.708 13 O -0.476 6.476 14 C -0.117 4.117 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.137 4.137 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.250 0.750 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.338 -3.381 1.175 24.600 hybrid contribution -0.759 0.668 -0.024 1.012 sum 23.579 -2.713 1.151 23.763 Atomic orbital electron populations 1.70078 1.08643 1.28493 1.51901 1.26101 0.95695 1.03934 0.93550 0.85518 0.79668 0.77170 0.79395 1.18898 1.21187 1.15897 1.21268 0.91668 0.93344 1.51753 0.95533 1.19641 0.94379 0.92812 0.98085 1.21014 0.79002 0.98434 0.99652 1.46117 1.07141 1.09296 1.74176 1.21552 0.91736 0.82907 0.74558 1.90657 1.71901 1.33120 1.51922 1.21396 0.87960 0.99858 1.02491 1.21568 0.97658 1.00338 0.95287 1.21524 0.93053 0.97104 1.03319 1.21590 1.01039 0.95700 0.97647 1.21526 0.93027 1.01328 0.99177 1.21318 0.96759 0.93943 1.01718 0.92283 0.94426 0.94564 0.94089 0.94148 0.74992 0.86262 0.90311 0.92832 0.90594 0.90354 0.92729 0.90332 0.91207 0.90639 0.93285 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.96 42.26 27.47 68.60 1.88 44.14 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 7 C -0.54 -31.33 9.66 25.60 0.25 -31.08 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 9 C -0.01 -0.51 4.16 29.85 0.12 -0.39 16 10 C 0.14 6.00 5.61 86.38 0.48 6.49 16 11 N -0.72 -22.88 5.45 -463.05 -2.52 -25.40 16 12 C 0.50 16.30 7.15 87.66 0.63 16.93 16 13 O -0.60 -25.09 15.98 -3.05 -0.05 -25.14 16 14 C -0.10 -2.07 2.53 -11.54 -0.03 -2.10 16 15 C -0.11 -1.93 5.10 30.59 0.16 -1.78 16 16 C -0.11 -1.40 5.92 30.60 0.18 -1.22 16 17 C -0.12 -1.58 5.92 30.60 0.18 -1.39 16 18 C -0.11 -1.67 5.92 30.58 0.18 -1.48 16 19 C -0.10 -2.17 4.49 30.58 0.14 -2.03 16 20 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 21 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 22 H 0.04 1.51 7.57 -2.39 -0.02 1.49 16 23 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.41 10.18 7.89 -92.71 -0.73 9.45 16 26 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 1.22 7.56 -2.39 -0.02 1.20 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 Total: -1.00 -71.99 289.69 2.62 -69.37 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.25 Total: 13.77 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 2.75 Total: -17.36 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.22 Total: -84.78 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.05 Total: -25.14 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -71.99 2.62 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138080.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.687 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds