Wall clock time and date at job start Sun Mar 29 2020 22:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99679 * 2 1 4 4 H 1.48506 * 109.47092 * 240.00102 * 3 2 1 5 5 H 1.48498 * 109.47525 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47152 * 120.00338 * 3 2 1 7 7 C 1.37871 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00363 * 175.14427 * 7 2 1 9 9 C 1.50707 * 120.00057 * 355.42288 * 7 2 1 10 10 C 1.53000 * 115.54894 * 274.92850 * 9 7 2 11 11 N 1.46893 * 109.46910 * 294.80001 * 10 9 7 12 12 C 1.46906 * 111.00098 * 185.39563 * 11 10 9 13 13 C 1.53183 * 109.54075 * 274.82499 * 12 11 10 14 14 C 1.53111 * 109.15305 * 183.23931 * 13 12 11 15 15 O 1.42902 * 109.48410 * 57.47192 * 14 13 12 16 16 C 1.42905 * 114.10185 * 298.88318 * 15 14 13 17 17 C 1.53089 * 109.41029 * 61.16327 * 16 15 14 18 18 C 1.52995 * 117.50167 * 129.25395 * 9 7 2 19 19 C 1.53004 * 117.49590 * 60.59171 * 9 7 2 20 20 H 0.97001 * 119.99851 * 5.00258 * 1 2 3 21 21 H 1.09001 * 109.46966 * 54.79892 * 10 9 7 22 22 H 1.08994 * 109.47300 * 174.79738 * 10 9 7 23 23 H 1.00901 * 111.00389 * 61.44246 * 11 10 9 24 24 H 1.09000 * 109.53859 * 34.99825 * 12 11 10 25 25 H 1.09000 * 109.52178 * 303.05173 * 13 12 11 26 26 H 1.08990 * 109.52349 * 63.24188 * 13 12 11 27 27 H 1.09000 * 109.40580 * 297.49184 * 14 13 12 28 28 H 1.08995 * 109.47741 * 177.49902 * 14 13 12 29 29 H 1.08998 * 109.47929 * 301.18321 * 16 15 14 30 30 H 1.09000 * 109.49231 * 181.15063 * 16 15 14 31 31 H 1.09001 * 109.52302 * 182.48583 * 17 16 15 32 32 H 1.09002 * 109.57564 * 62.33080 * 17 16 15 33 33 H 1.09006 * 117.49815 * 0.02562 * 18 9 7 34 34 H 1.09002 * 117.49855 * 145.02006 * 18 9 7 35 35 H 1.09000 * 117.49742 * 214.97497 * 19 9 7 36 36 H 1.08997 * 117.49975 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0786 9 6 1.2547 -2.4970 0.1053 10 6 0.9189 -2.9527 1.5267 11 7 2.1614 -3.2474 2.2528 12 6 1.8752 -3.8098 3.5794 13 6 1.6439 -2.6724 4.5791 14 6 1.4267 -3.2658 5.9737 15 8 2.5566 -4.0633 6.3336 16 6 2.7914 -5.1702 5.4608 17 6 3.0656 -4.6533 4.0461 18 6 1.5731 -3.5803 -0.9272 19 6 0.2453 -2.8218 -0.9977 20 1 -0.4850 0.8369 -0.0733 21 1 0.3753 -2.1615 2.0430 22 1 0.3013 -3.8498 1.4843 23 1 2.7411 -2.4248 2.3262 24 1 0.9840 -4.4350 3.5258 25 1 2.5156 -2.0182 4.5946 26 1 0.7639 -2.1012 4.2837 27 1 0.5307 -3.8865 5.9677 28 1 1.3057 -2.4594 6.6970 29 1 1.9132 -5.8157 5.4481 30 1 3.6533 -5.7359 5.8145 31 1 3.2013 -5.4974 3.3698 32 1 3.9671 -4.0407 4.0494 33 1 2.3252 -3.3507 -1.6820 34 1 1.5430 -4.6177 -0.5938 35 1 -0.6577 -3.3606 -0.7108 36 1 0.1233 -2.0928 -1.7988 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:45 Heat of formation + Delta-G solvation = -51.342000 kcal Electronic energy + Delta-G solvation = -16026.639647 eV Core-core repulsion = 13510.155563 eV Total energy + Delta-G solvation = -2516.484084 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40400 -38.63594 -36.34534 -33.96608 -32.17792 -31.88520 -27.76935 -26.51520 -24.42916 -23.89143 -22.77971 -21.46594 -20.73769 -17.96086 -17.31606 -16.91394 -16.62506 -16.17825 -15.81932 -15.58707 -15.33434 -14.83473 -14.29502 -14.09147 -13.39739 -13.33146 -13.06988 -12.92093 -12.81242 -12.37046 -12.29564 -12.18886 -11.98586 -11.82772 -11.37186 -11.11452 -10.82400 -10.59335 -10.37621 -9.90135 -9.08316 -8.08100 -6.20604 1.41012 1.41888 1.48867 2.42122 2.96246 3.18886 3.26490 3.72786 3.80391 3.96502 4.06147 4.26017 4.30128 4.36367 4.55662 4.59347 4.63887 4.72920 4.76358 4.78773 4.90876 4.99965 5.03086 5.07815 5.12935 5.23326 5.30498 5.34309 5.65153 5.71091 5.81032 6.26423 6.37243 6.48159 6.61922 6.88536 7.47592 8.98191 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028182 B = 0.007721 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.314470 B = 3625.782541 C = 4171.988609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.504 4.504 8 H 0.051 0.949 9 C 0.023 3.977 10 C 0.122 3.878 11 N -0.673 5.673 12 C 0.083 3.917 13 C -0.182 4.182 14 C 0.070 3.930 15 O -0.401 6.401 16 C 0.062 3.938 17 C -0.135 4.135 18 C -0.180 4.180 19 C -0.162 4.162 20 H 0.258 0.742 21 H 0.002 0.998 22 H 0.047 0.953 23 H 0.339 0.661 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -8.035 9.743 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.771 3.229 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.007 4.007 11 N -0.302 5.302 12 C -0.027 4.027 13 C -0.221 4.221 14 C -0.007 4.007 15 O -0.320 6.320 16 C -0.015 4.015 17 C -0.173 4.173 18 C -0.217 4.217 19 C -0.201 4.201 20 H 0.067 0.933 21 H 0.020 0.980 22 H 0.065 0.935 23 H 0.157 0.843 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.731 -8.487 9.650 13.138 hybrid contribution -0.377 2.030 -0.258 2.081 sum 2.353 -6.457 9.392 11.637 Atomic orbital electron populations 1.70105 1.06985 1.27142 1.50337 1.25640 0.95504 1.01684 0.94624 0.85819 0.78493 0.79751 0.78797 1.20025 1.21319 1.19573 1.20668 0.92591 0.90207 1.50705 0.93064 1.18922 0.98292 0.92937 0.87601 1.21185 0.89960 0.95633 0.93932 1.60543 1.17309 1.36044 1.16351 1.21703 0.98394 0.95236 0.87411 1.22887 1.02019 0.99528 0.97696 1.22538 0.88484 0.94836 0.94882 1.87879 1.49377 1.42228 1.52503 1.22744 1.02307 0.87936 0.88518 1.22121 0.97712 1.00316 0.97159 1.22843 0.98328 0.96429 1.04076 1.22403 0.91992 1.01933 1.03727 0.93284 0.98017 0.93455 0.84266 0.91077 0.92083 0.92344 0.92134 0.87974 0.92091 0.86921 0.89872 0.92046 0.91209 0.89606 0.91238 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.57 12.65 21.45 0.27 -51.30 16 2 C 0.03 1.39 5.43 84.65 0.46 1.85 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.50 -27.13 8.33 25.60 0.21 -26.91 16 8 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 9 C 0.02 1.13 1.65 -52.93 -0.09 1.04 16 10 C 0.12 5.37 5.38 86.30 0.46 5.83 16 11 N -0.67 -25.63 6.22 -490.96 -3.06 -28.68 16 12 C 0.08 2.53 2.55 45.03 0.11 2.64 16 13 C -0.18 -5.37 5.41 30.69 0.17 -5.20 16 14 C 0.07 1.68 6.84 72.02 0.49 2.18 16 15 O -0.40 -10.27 10.77 -148.98 -1.60 -11.87 16 16 C 0.06 1.31 6.84 72.01 0.49 1.80 16 17 C -0.13 -3.43 5.75 30.68 0.18 -3.25 16 18 C -0.18 -7.91 9.96 30.62 0.30 -7.60 16 19 C -0.16 -7.80 9.14 30.62 0.28 -7.52 16 20 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 21 H 0.00 0.08 7.67 -2.39 -0.02 0.06 16 22 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 23 H 0.34 13.94 8.02 -89.69 -0.72 13.22 16 24 H 0.07 2.14 7.72 -2.39 -0.02 2.12 16 25 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16 26 H 0.06 1.90 7.67 -2.39 -0.02 1.88 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 3.08 8.14 -2.38 -0.02 3.07 16 34 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -58.25 292.37 1.04 -57.21 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.32 Total: 24.60 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 3.08 Total: -35.14 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.78 Total: -79.98 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.60 Total: -11.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -58.25 1.04 -57.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.868 kcal (2) G-P(sol) polarization free energy of solvation -58.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds