Wall clock time and date at job start Sun Mar 29 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.52997 * 110.30584 * 57.36718 * 3 2 1 5 5 C 1.53009 * 109.47122 * 61.96235 * 4 3 2 6 6 C 1.54592 * 110.31980 * 295.10259 * 3 2 1 7 7 C 1.54392 * 104.81110 * 241.11046 * 6 3 2 8 8 N 1.48146 * 104.72161 * 23.89403 * 7 6 3 9 9 C 1.34770 * 127.83815 * 140.35834 * 8 7 6 10 10 O 1.21694 * 120.00442 * 179.97438 * 9 8 7 11 11 C 1.46381 * 120.00268 * 359.97393 * 9 8 7 12 12 H 1.07999 * 119.99452 * 353.47149 * 11 9 8 13 13 C 1.40041 * 120.00407 * 173.46312 * 11 9 8 14 14 N 1.30672 * 120.00164 * 6.62459 * 13 11 9 15 15 Si 1.86796 * 120.00239 * 186.62218 * 13 11 9 16 16 H 1.48504 * 109.47264 * 94.95288 * 15 13 11 17 17 H 1.48498 * 109.47604 * 214.95623 * 15 13 11 18 18 H 1.48501 * 109.47166 * 334.95644 * 15 13 11 19 19 C 1.48151 * 104.32352 * 320.35654 * 8 7 6 20 20 H 1.09006 * 109.46869 * 53.42165 * 1 2 3 21 21 H 1.08996 * 109.47507 * 173.42311 * 1 2 3 22 22 H 1.09004 * 109.47234 * 293.42821 * 1 2 3 23 23 H 1.08999 * 109.47001 * 240.00412 * 2 1 3 24 24 H 1.08996 * 109.46882 * 119.99807 * 2 1 3 25 25 H 1.08998 * 109.47454 * 181.95883 * 4 3 2 26 26 H 1.09002 * 109.47203 * 301.96602 * 4 3 2 27 27 H 1.09004 * 109.46745 * 58.97670 * 5 4 3 28 28 H 1.08996 * 109.46975 * 178.97682 * 5 4 3 29 29 H 1.08998 * 109.46655 * 298.97808 * 5 4 3 30 30 H 1.08996 * 110.43733 * 122.27187 * 6 3 2 31 31 H 1.08993 * 110.38847 * 359.91457 * 6 3 2 32 32 H 1.09001 * 110.40433 * 265.05195 * 7 6 3 33 33 H 1.08996 * 110.41034 * 142.74231 * 7 6 3 34 34 H 0.97000 * 120.00308 * 179.97438 * 14 13 11 35 35 H 1.08996 * 110.40258 * 158.37270 * 19 8 7 36 36 H 1.09004 * 110.40823 * 280.79705 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4875 2.2010 1.2084 5 6 1.9826 1.5392 2.4960 6 6 1.6391 2.1537 -1.3128 7 6 2.9781 2.5429 -1.9756 8 7 3.9664 1.5929 -1.4140 9 6 4.9829 0.9826 -2.0546 10 8 5.7150 0.2223 -1.4487 11 6 5.2067 1.2341 -3.4791 12 1 4.4976 1.8238 -4.0411 13 6 6.3401 0.7103 -4.1132 14 7 7.1293 -0.1083 -3.4693 15 14 6.7239 1.1815 -5.8795 16 1 7.6779 2.3195 -5.8921 17 1 7.3285 0.0210 -6.5814 18 1 5.4703 1.5790 -6.5693 19 6 3.5837 1.4660 0.0116 20 1 -0.3633 0.6125 -0.8253 21 1 -0.3634 -1.0208 -0.1177 22 1 -0.3634 0.4086 0.9430 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8306 3.2351 1.1763 26 1 0.3979 2.1788 1.1842 27 1 3.0725 1.5452 2.5116 28 1 1.6038 2.0903 3.3567 29 1 1.6243 0.5106 2.5367 30 1 1.0493 3.0448 -1.0981 31 1 1.0807 1.4748 -1.9572 32 1 3.2463 3.5673 -1.7173 33 1 2.9138 2.4291 -3.0577 34 1 7.9142 -0.4714 -3.9086 35 1 3.9748 0.5382 0.4289 36 1 3.9466 2.3222 0.5803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087254177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:41 Heat of formation + Delta-G solvation = -55.063732 kcal Electronic energy + Delta-G solvation = -16292.987553 eV Core-core repulsion = 13776.342082 eV Total energy + Delta-G solvation = -2516.645471 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.29736 -36.45114 -33.75770 -32.45303 -31.14354 -29.17669 -27.92557 -25.99497 -23.63551 -22.97435 -21.69248 -19.21342 -18.06501 -16.49758 -15.58395 -15.02798 -14.97830 -14.30396 -14.21620 -13.65509 -13.07458 -12.73448 -12.47332 -12.31236 -11.88990 -11.81537 -11.55735 -11.37503 -11.25866 -11.04532 -10.90408 -10.76515 -10.63141 -10.38959 -10.17724 -9.97737 -9.89689 -9.79133 -8.83670 -7.60292 -7.19004 -6.19257 -4.61762 3.14455 3.21403 3.24994 4.10004 4.56337 4.65053 4.91653 5.06776 5.07581 5.42410 5.44619 5.55461 5.61257 5.67944 5.79950 5.87068 5.92068 5.98966 6.05260 6.07243 6.18180 6.24262 6.35757 6.41733 6.44985 6.47079 6.58828 6.68671 6.75174 6.81654 7.37387 7.46200 8.14064 8.46676 9.03796 9.57585 10.59799 10.79120 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.043262 B = 0.007137 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.056791 B = 3922.305059 C = 4084.493430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.072 4.072 4 C -0.107 4.107 5 C -0.155 4.155 6 C -0.126 4.126 7 C 0.114 3.886 8 N -0.645 5.645 9 C 0.577 3.423 10 O -0.578 6.578 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 C 0.120 3.880 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.941 4.423 5.235 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.073 4.073 4 C -0.145 4.145 5 C -0.212 4.212 6 C -0.165 4.165 7 C -0.011 4.011 8 N -0.384 5.384 9 C 0.384 3.616 10 O -0.461 6.461 11 C -0.577 4.577 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.004 4.004 20 H 0.073 0.927 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.240 3.805 5.497 13.078 hybrid contribution 0.143 0.338 -0.876 0.950 sum -11.097 4.142 4.621 12.714 Atomic orbital electron populations 1.21838 0.96434 1.00995 1.01466 1.21542 0.95029 0.95732 1.02253 1.21591 0.96115 0.95160 0.94417 1.21585 1.00088 0.98857 0.93941 1.21841 1.01778 1.00701 0.96884 1.22736 0.97826 0.99647 0.96247 1.21962 0.87508 0.92717 0.98909 1.49217 1.32604 1.48483 1.08063 1.17995 0.77148 0.78902 0.87553 1.90607 1.47075 1.39469 1.68907 1.20873 1.08822 1.35265 0.92741 0.91251 1.25720 0.95383 0.93035 0.99100 1.70031 1.10995 1.22122 1.36631 0.86359 0.79219 0.78634 0.82565 1.19776 1.20430 1.18866 1.21988 0.91579 1.00536 0.86290 0.92659 0.93374 0.92936 0.91623 0.92127 0.92202 0.91989 0.92353 0.93376 0.92588 0.91702 0.91430 0.93672 0.90809 0.92104 0.91343 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.18 37.16 0.34 -1.46 16 2 C -0.11 -1.62 4.36 -26.73 -0.12 -1.74 16 3 C -0.07 -1.09 0.49 -152.94 -0.08 -1.17 16 4 C -0.11 -1.32 4.33 -26.73 -0.12 -1.44 16 5 C -0.15 -1.82 9.38 37.16 0.35 -1.47 16 6 C -0.13 -1.90 5.71 -25.16 -0.14 -2.05 16 7 C 0.11 2.15 6.88 -2.41 -0.02 2.13 16 8 N -0.64 -15.27 3.32 -170.96 -0.57 -15.83 16 9 C 0.58 17.04 7.84 -12.99 -0.10 16.94 16 10 O -0.58 -19.36 15.32 5.19 0.08 -19.28 16 11 C -0.54 -15.60 9.08 -35.63 -0.32 -15.92 16 12 H 0.07 1.85 6.47 -52.49 -0.34 1.51 16 13 C 0.09 2.47 5.49 -17.37 -0.10 2.38 16 14 N -0.77 -23.44 11.86 55.55 0.66 -22.78 16 15 Si 0.91 20.40 29.56 -169.99 -5.03 15.37 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 19 C 0.12 2.39 5.04 -2.41 -0.01 2.37 16 20 H 0.05 0.64 6.68 -51.93 -0.35 0.30 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 27 H 0.06 0.75 7.08 -51.93 -0.37 0.38 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 30 H 0.06 0.82 7.73 -51.93 -0.40 0.42 16 31 H 0.07 1.01 6.79 -51.93 -0.35 0.66 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.43 6.65 -51.93 -0.35 1.08 16 34 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 35 H 0.07 1.50 7.60 -51.93 -0.39 1.10 16 36 H 0.05 0.85 7.65 -51.93 -0.40 0.46 16 LS Contribution 281.49 15.07 4.24 4.24 Total: -1.00 -33.88 281.49 -6.50 -40.39 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.58 Total: -0.68 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.31 Total: -1.42 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.09 Total: -38.62 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.88 -6.50 -40.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087254177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.678 kcal (2) G-P(sol) polarization free energy of solvation -33.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds