Wall clock time and date at job start Sun Mar 29 2020 22:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 C 1.52998 * 109.47375 * 239.99564 * 2 1 3 5 5 C 1.53000 * 109.47263 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47252 * 59.99795 * 5 4 2 7 7 C 1.52998 * 109.47154 * 300.00272 * 6 5 4 8 8 H 1.09002 * 109.46822 * 299.99651 * 7 6 5 9 9 N 1.46504 * 109.46811 * 180.02562 * 7 6 5 10 10 C 1.34774 * 120.00240 * 84.99982 * 9 7 6 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 9 7 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 9 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 18 18 H 1.48510 * 109.46748 * 300.00101 * 16 14 12 19 19 H 1.48498 * 109.47206 * 59.99778 * 16 14 12 20 20 C 1.52997 * 109.47053 * 60.00238 * 7 6 5 21 21 H 1.08993 * 109.47257 * 300.00368 * 1 2 3 22 22 H 1.08998 * 109.46846 * 60.00660 * 1 2 3 23 23 H 1.08996 * 109.46845 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46878 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46631 * 299.99471 * 3 2 1 26 26 H 1.08993 * 109.47266 * 59.99638 * 3 2 1 27 27 H 1.09002 * 109.47294 * 299.99851 * 4 2 1 28 28 H 1.08998 * 109.47317 * 60.00064 * 4 2 1 29 29 H 1.09002 * 109.47190 * 179.97438 * 5 4 2 30 30 H 1.09007 * 109.46950 * 300.00135 * 5 4 2 31 31 H 1.09006 * 109.46987 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.47232 * 60.00570 * 6 5 4 33 33 H 0.97005 * 119.99919 * 264.99766 * 9 7 6 34 34 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 35 35 H 1.08990 * 109.47430 * 59.99791 * 20 7 6 36 36 H 1.09002 * 109.46979 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 6 4.0796 -1.4433 0.0005 7 6 3.5695 -0.7220 1.2497 8 1 3.9332 0.3055 1.2498 9 7 4.0579 -1.4126 2.4459 10 6 5.2798 -1.1267 2.9374 11 8 5.9773 -0.2946 2.3878 12 6 5.7675 -1.8162 4.1329 13 1 5.1484 -2.5543 4.6209 14 6 7.0371 -1.5188 4.6439 15 7 7.7865 -0.6259 4.0531 16 14 7.6599 -2.3992 6.1691 17 1 9.0206 -1.9077 6.5035 18 1 6.7431 -2.1287 7.3057 19 1 7.7104 -3.8607 5.9110 20 6 2.0395 -0.7216 1.2493 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6768 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.9334 -1.2362 -2.1385 30 1 3.9338 0.3057 -1.2486 31 1 5.1696 -1.4433 0.0009 32 1 3.7160 -2.4709 0.0004 33 1 3.5018 -2.0755 2.8842 34 1 8.6656 -0.4197 4.4073 35 1 1.6759 -1.7491 1.2492 36 1 1.6762 -0.2073 2.1391 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149797556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:05 Heat of formation + Delta-G solvation = -73.724114 kcal Electronic energy + Delta-G solvation = -16153.650382 eV Core-core repulsion = 13636.195737 eV Total energy + Delta-G solvation = -2517.454646 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42801 -36.85110 -33.54843 -32.35231 -31.86628 -28.90570 -27.18780 -26.12350 -25.89200 -22.06547 -20.96575 -19.29334 -18.26504 -16.98921 -15.31454 -15.28200 -14.54757 -14.21434 -14.16850 -13.60895 -13.43897 -13.03203 -12.41885 -12.28311 -12.04998 -11.80515 -11.70938 -11.18588 -11.11888 -11.08750 -10.91651 -10.66451 -10.61610 -10.44155 -10.26871 -10.06929 -9.80144 -9.58594 -8.80260 -7.53926 -7.39559 -6.13473 -4.59080 3.18187 3.22868 3.24840 4.13946 4.63646 4.70589 4.86511 4.96252 5.19824 5.43010 5.50446 5.61355 5.72057 5.74648 5.79528 5.85619 5.86057 5.96859 6.01892 6.05420 6.15873 6.20580 6.26871 6.30718 6.51400 6.52938 6.56710 6.68638 6.91246 7.01748 7.47521 8.01024 8.21158 8.40001 9.07162 9.62684 10.65856 10.85633 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052211 B = 0.006264 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.154884 B = 4468.661963 C = 4606.668802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.127 4.127 7 C 0.155 3.845 8 H 0.077 0.923 9 N -0.764 5.764 10 C 0.556 3.444 11 O -0.581 6.581 12 C -0.548 4.548 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.906 3.094 17 H -0.281 1.281 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.113 4.113 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.378 0.622 34 H 0.268 0.732 35 H 0.059 0.941 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 -0.575 -7.007 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.166 4.166 7 C 0.049 3.951 8 H 0.095 0.905 9 N -0.418 5.418 10 C 0.360 3.640 11 O -0.464 6.464 12 C -0.585 4.585 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.731 3.269 17 H -0.206 1.206 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.151 4.151 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.209 0.791 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.026 0.160 -7.409 13.285 hybrid contribution 0.034 -0.843 0.984 1.296 sum -10.993 -0.683 -6.425 12.751 Atomic orbital electron populations 1.21856 0.95027 1.01388 1.01364 1.20483 0.94684 0.95722 0.95310 1.21991 1.02259 0.95079 1.01041 1.21589 0.96056 0.99945 0.96698 1.21560 0.95005 1.01167 0.97938 1.21949 1.01580 0.98725 0.94356 1.20523 0.91270 0.97505 0.85789 0.90505 1.46195 1.20138 1.45680 1.29761 1.18178 0.78761 0.82517 0.84560 1.90587 1.56286 1.36823 1.62670 1.20877 1.01764 1.24405 1.11425 0.91620 1.25696 0.96282 0.93949 0.97210 1.70019 1.08420 1.25412 1.35963 0.86463 0.78120 0.80224 0.82085 1.20596 1.19341 1.19339 1.21854 0.96150 1.00069 0.97005 0.92790 0.92987 0.92910 0.91447 0.93196 0.92875 0.92303 0.92536 0.92631 0.91721 0.91443 0.92915 0.79148 0.92155 0.92222 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.47 37.16 0.31 -1.17 16 2 C -0.06 -0.79 0.77 -154.50 -0.12 -0.91 16 3 C -0.15 -1.94 7.78 37.16 0.29 -1.65 16 4 C -0.11 -1.31 4.73 -26.73 -0.13 -1.44 16 5 C -0.12 -1.73 5.65 -26.73 -0.15 -1.88 16 6 C -0.13 -2.31 5.49 -26.73 -0.15 -2.45 16 7 C 0.16 3.02 2.18 -67.93 -0.15 2.87 16 8 H 0.08 1.71 5.86 -51.93 -0.30 1.41 16 9 N -0.76 -17.40 5.07 -55.21 -0.28 -17.68 16 10 C 0.56 16.00 7.71 -12.99 -0.10 15.90 16 11 O -0.58 -18.91 14.68 5.20 0.08 -18.83 16 12 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 13 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 14 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 15 N -0.77 -23.38 11.83 55.55 0.66 -22.73 16 16 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 C -0.11 -1.70 4.20 -26.73 -0.11 -1.82 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.02 4.81 -51.93 -0.25 0.77 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.98 6.43 -51.92 -0.33 0.64 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.38 7.64 8.58 -40.82 -0.35 7.29 16 34 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -33.09 284.02 -6.88 -39.97 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.86 Total: 5.79 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -0.73 Total: -6.20 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.38 Total: -40.40 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.09 -6.88 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149797556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.755 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds