Wall clock time and date at job start Sun Mar 29 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47459 * 2 1 4 4 C 1.53006 * 109.47361 * 175.07677 * 3 2 1 5 5 H 1.08995 * 109.58698 * 60.16660 * 4 3 2 6 6 C 1.53193 * 109.58369 * 299.88392 * 4 3 2 7 7 C 1.53038 * 109.31020 * 185.57833 * 6 4 3 8 8 C 1.53039 * 109.53856 * 61.36438 * 7 6 4 9 9 C 1.53190 * 109.31708 * 298.63387 * 8 7 6 10 10 N 1.46928 * 109.58634 * 180.45512 * 4 3 2 11 11 C 1.34780 * 120.63221 * 353.39152 * 10 4 3 12 12 O 1.21688 * 119.99840 * 5.57141 * 11 10 4 13 13 C 1.46374 * 120.00217 * 185.56982 * 11 10 4 14 14 H 1.08003 * 119.99621 * 355.00073 * 13 11 10 15 15 C 1.40044 * 119.99960 * 174.99378 * 13 11 10 16 16 N 1.30677 * 120.00220 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99962 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46827 * 60.00553 * 17 15 13 19 19 H 1.48502 * 109.47143 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47271 * 300.00655 * 17 15 13 21 21 H 1.09002 * 109.46744 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47090 * 300.00154 * 1 2 3 23 23 H 1.09001 * 109.46823 * 59.99717 * 1 2 3 24 24 H 1.09005 * 109.47317 * 120.00288 * 2 1 3 25 25 H 1.08998 * 109.47090 * 239.99846 * 2 1 3 26 26 H 1.08997 * 109.47172 * 295.07634 * 3 2 1 27 27 H 1.09000 * 109.47208 * 55.07573 * 3 2 1 28 28 H 1.09002 * 109.50087 * 305.52892 * 6 4 3 29 29 H 1.09002 * 109.49404 * 65.62766 * 6 4 3 30 30 H 1.09000 * 109.46294 * 181.38883 * 7 6 4 31 31 H 1.09003 * 109.46098 * 301.34652 * 7 6 4 32 32 H 1.08999 * 109.49792 * 58.59227 * 8 7 6 33 33 H 1.09009 * 109.49719 * 178.64865 * 8 7 6 34 34 H 1.08992 * 109.58953 * 174.41918 * 9 8 7 35 35 H 1.09004 * 109.58501 * 294.70849 * 9 8 7 36 36 H 0.96994 * 119.99800 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5651 1.4442 0.1238 5 1 4.0008 0.9084 -0.7195 6 6 3.9748 0.7617 1.4327 7 6 5.4886 0.8895 1.6178 8 6 5.8705 2.3689 1.7042 9 6 5.4824 3.0696 0.3985 10 7 4.0568 2.8287 0.1350 11 6 3.2158 3.8579 -0.0886 12 8 2.0214 3.6542 -0.2015 13 6 3.7391 5.2207 -0.1955 14 1 4.7866 5.4126 -0.0154 15 6 2.8815 6.2757 -0.5315 16 7 1.6141 6.0436 -0.7490 17 14 3.5492 8.0150 -0.6672 18 1 4.6016 8.0609 -1.7140 19 1 2.4472 8.9413 -1.0317 20 1 4.1296 8.4257 0.6365 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.7506 1.9302 -0.9308 27 1 1.6065 1.9811 0.8426 28 1 3.4644 1.2409 2.2682 29 1 3.7006 -0.2926 1.3946 30 1 5.7862 0.3833 2.5362 31 1 5.9980 0.4319 0.7698 32 1 5.3424 2.8330 2.5372 33 1 6.9457 2.4586 1.8601 34 1 5.6609 4.1408 0.4915 35 1 6.0782 2.6697 -0.4220 36 1 1.0201 6.7744 -0.9814 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213506296.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:07 Heat of formation + Delta-G solvation = -45.804972 kcal Electronic energy + Delta-G solvation = -16490.744820 eV Core-core repulsion = 13974.500839 eV Total energy + Delta-G solvation = -2516.243981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.97055 -35.71776 -34.42117 -32.52043 -31.49634 -30.37579 -26.71837 -25.73922 -23.54454 -22.29023 -20.37231 -20.13244 -18.67620 -16.36664 -15.53637 -14.80066 -14.39378 -14.36213 -13.79171 -13.76096 -13.16551 -12.88224 -12.66452 -12.54424 -11.76197 -11.51543 -11.26971 -11.08631 -11.03705 -10.93700 -10.65152 -10.54321 -10.36775 -10.25294 -10.20277 -9.87117 -9.66929 -9.57619 -8.81498 -7.12020 -7.03173 -6.10103 -4.60923 3.15925 3.21221 3.22518 4.10312 4.55876 4.61156 5.28611 5.33127 5.37482 5.58513 5.61580 5.73262 5.80564 5.82495 5.97272 6.06870 6.14729 6.25030 6.29778 6.34485 6.40215 6.50562 6.54223 6.59002 6.60648 6.61455 6.72174 6.84941 7.29949 7.47753 7.53325 7.73839 8.21320 8.42311 9.05357 9.50674 10.61333 10.80961 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025445 B = 0.009981 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.167946 B = 2804.724413 C = 3788.258987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C -0.094 4.094 4 C 0.156 3.844 5 H 0.042 0.958 6 C -0.131 4.131 7 C -0.115 4.115 8 C -0.135 4.135 9 C 0.122 3.878 10 N -0.639 5.639 11 C 0.559 3.441 12 O -0.566 6.566 13 C -0.546 4.546 14 H 0.070 0.930 15 C 0.089 3.911 16 N -0.768 5.768 17 Si 0.904 3.096 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.268 1.268 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.648 2.730 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.132 4.132 4 C 0.051 3.949 5 H 0.060 0.940 6 C -0.169 4.169 7 C -0.153 4.153 8 C -0.174 4.174 9 C -0.003 4.003 10 N -0.377 5.377 11 C 0.365 3.635 12 O -0.449 6.449 13 C -0.583 4.583 14 H 0.088 0.912 15 C -0.130 4.130 16 N -0.397 5.397 17 Si 0.728 3.272 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.400 -7.667 2.606 9.216 hybrid contribution 0.558 0.808 0.001 0.982 sum 4.958 -6.859 2.606 8.855 Atomic orbital electron populations 1.21676 0.96469 0.99948 1.02053 1.21873 0.95705 0.99614 1.00359 1.22081 0.92835 0.92353 1.05913 1.20883 0.95333 0.84080 0.94554 0.93992 1.22053 0.95541 0.99892 0.99453 1.21473 0.96551 0.96640 1.00586 1.21951 0.99945 0.95841 0.99660 1.21395 0.83407 1.01256 0.94196 1.48209 1.07838 1.04798 1.76878 1.18147 0.85102 0.84031 0.76207 1.90612 1.15488 1.83609 1.55208 1.21004 0.95859 0.90899 1.50544 0.91195 1.25692 0.94331 1.00100 0.92924 1.69995 1.03756 1.32509 1.33426 0.86501 0.79082 0.82260 0.79309 1.19333 1.20604 1.19336 0.94016 0.92984 0.92809 0.93017 0.93342 0.89408 0.90732 0.92034 0.92094 0.92973 0.92576 0.91916 0.92228 0.89124 0.94253 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.29 5.72 -26.73 -0.15 -2.44 16 3 C -0.09 -2.00 3.14 -26.73 -0.08 -2.08 16 4 C 0.16 3.12 3.01 -67.59 -0.20 2.91 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.13 -2.17 4.86 -26.61 -0.13 -2.30 16 7 C -0.11 -1.69 5.88 -26.69 -0.16 -1.84 16 8 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 9 C 0.12 2.32 6.31 -3.69 -0.02 2.30 16 10 N -0.64 -14.63 2.98 -166.84 -0.50 -15.12 16 11 C 0.56 15.61 7.53 -12.99 -0.10 15.52 16 12 O -0.57 -17.29 10.43 5.20 0.05 -17.23 16 13 C -0.55 -15.20 8.86 -35.63 -0.32 -15.52 16 14 H 0.07 1.79 5.70 -52.48 -0.30 1.49 16 15 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 16 N -0.77 -22.66 11.84 55.55 0.66 -22.01 16 17 Si 0.90 20.04 29.56 -169.99 -5.02 15.02 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.79 6.32 -51.93 -0.33 0.46 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 2.19 6.48 -51.93 -0.34 1.85 16 27 H 0.07 1.80 7.00 -51.93 -0.36 1.44 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.89 6.65 -51.93 -0.35 0.54 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.09 1.81 5.39 -51.93 -0.28 1.53 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -31.06 278.33 -7.40 -38.46 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.74 Total: 2.00 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.05 Total: -5.31 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.16 Total: -37.13 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.05 Total: -17.23 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.06 -7.40 -38.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213506296.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.342 kcal (2) G-P(sol) polarization free energy of solvation -31.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds