Wall clock time and date at job start Sun Mar 29 2020 22:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.05703 * 2 1 4 4 C 1.54090 * 110.16081 * 238.53080 * 2 1 3 5 5 C 1.54259 * 106.62084 * 240.88278 * 4 2 1 6 6 C 1.54893 * 104.19814 * 336.27583 * 5 4 2 7 7 C 1.54271 * 110.03285 * 121.41575 * 2 1 3 8 8 H 1.08999 * 110.48424 * 24.08533 * 7 2 1 9 9 C 1.50693 * 110.48822 * 261.57491 * 7 2 1 10 10 O 1.21288 * 119.99819 * 269.08656 * 9 7 2 11 11 N 1.34773 * 120.00395 * 89.08421 * 9 7 2 12 12 C 1.46503 * 120.00455 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47300 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99728 * 180.02562 * 13 12 11 16 16 N 1.31507 * 120.00306 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99970 * 180.27740 * 15 13 12 18 18 H 1.48501 * 109.47637 * 179.72380 * 17 15 13 19 19 H 1.48502 * 109.46905 * 299.72783 * 17 15 13 20 20 H 1.48504 * 109.47010 * 59.71973 * 17 15 13 21 21 H 1.09000 * 109.46982 * 298.58526 * 1 2 3 22 22 H 1.08999 * 109.47208 * 58.58301 * 1 2 3 23 23 H 1.09001 * 109.47099 * 178.58426 * 1 2 3 24 24 H 1.09003 * 109.47158 * 175.72109 * 3 2 1 25 25 H 1.08997 * 109.47264 * 295.72024 * 3 2 1 26 26 H 1.08997 * 109.47183 * 55.72109 * 3 2 1 27 27 H 1.08999 * 110.10896 * 121.53445 * 4 2 1 28 28 H 1.09001 * 109.96615 * 0.14437 * 4 2 1 29 29 H 1.09004 * 110.48165 * 217.60149 * 5 4 2 30 30 H 1.09002 * 110.60135 * 95.01679 * 5 4 2 31 31 H 1.08996 * 110.75788 * 279.62794 * 6 5 4 32 32 H 1.08999 * 110.75612 * 156.25594 * 6 5 4 33 33 H 0.97002 * 119.99825 * 0.02562 * 11 9 7 34 34 H 1.08999 * 109.46488 * 60.00219 * 12 11 9 35 35 H 1.09005 * 109.46849 * 300.00581 * 12 11 9 36 36 H 0.96999 * 120.00419 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0611 -0.7551 -1.2337 5 6 2.8884 -1.9434 -0.7015 6 6 3.3132 -1.5033 0.7216 7 6 2.0585 -0.7555 1.2369 8 1 1.3134 -1.4643 1.5980 9 6 2.4335 0.2148 2.3272 10 8 3.5650 0.6467 2.3918 11 7 1.5116 0.6028 3.2305 12 6 1.8762 1.5457 4.2908 13 6 0.6749 1.8128 5.1606 14 1 -0.2660 1.3284 4.9454 15 6 0.7771 2.6757 6.2310 16 7 1.9230 3.2652 6.4934 17 14 -0.7099 3.0009 7.3138 18 1 -0.3389 3.9530 8.3914 19 1 -1.8019 3.5831 6.4931 20 1 -1.1710 1.7249 7.9177 21 1 -0.3633 0.4917 0.9024 22 1 -0.3633 0.5357 -0.8770 23 1 -0.3633 -1.0274 -0.0254 24 1 3.1420 1.4270 0.0767 25 1 1.7604 1.9314 -0.9258 26 1 1.6356 1.9770 0.8491 27 1 2.6928 -0.0984 -1.8318 28 1 1.2276 -1.1197 -1.8343 29 1 3.7653 -2.1084 -1.3274 30 1 2.2783 -2.8455 -0.6557 31 1 4.1718 -0.8333 0.6786 32 1 3.5294 -2.3705 1.3456 33 1 0.6067 0.2572 3.1790 34 1 2.2172 2.4799 3.8446 35 1 2.6757 1.1194 4.8968 36 1 1.9951 3.8720 7.2467 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226406677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:54 Heat of formation + Delta-G solvation = -93.033183 kcal Electronic energy + Delta-G solvation = -16090.442431 eV Core-core repulsion = 13572.150481 eV Total energy + Delta-G solvation = -2518.291950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40669 -38.70995 -36.12798 -34.35750 -33.08229 -30.71260 -28.87644 -28.23498 -25.79624 -24.60142 -22.15454 -21.18288 -19.99754 -18.57822 -17.57523 -17.05908 -16.52295 -16.22226 -15.76561 -15.15436 -14.60393 -14.54321 -14.21457 -14.02609 -14.00485 -13.56672 -13.04334 -12.90999 -12.69267 -12.66984 -12.35798 -12.24888 -11.92574 -11.63740 -11.51743 -11.48038 -11.40191 -11.28898 -10.80228 -10.58118 -9.80720 -8.30315 -6.47505 1.41471 1.45900 1.54179 1.80690 2.32224 2.63083 3.04174 3.54509 3.61638 3.79255 4.21277 4.34816 4.40565 4.42129 4.49968 4.54142 4.74836 4.76708 4.92003 5.02667 5.03838 5.10265 5.13568 5.18559 5.22394 5.25537 5.34525 5.41739 5.47491 5.50094 5.57125 5.71284 5.84329 6.63619 6.94368 7.22252 7.52806 8.81829 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045422 B = 0.006290 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.288757 B = 4450.485623 C = 4687.032279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.051 4.051 3 C -0.143 4.143 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.103 4.103 8 H 0.114 0.886 9 C 0.507 3.493 10 O -0.603 6.603 11 N -0.709 5.709 12 C 0.269 3.731 13 C -0.557 4.557 14 H 0.083 0.917 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.985 3.015 18 H -0.285 1.285 19 H -0.262 1.262 20 H -0.261 1.261 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.405 0.595 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -10.382 -14.881 18.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.124 4.124 8 H 0.132 0.868 9 C 0.295 3.705 10 O -0.485 6.485 11 N -0.358 5.358 12 C 0.146 3.854 13 C -0.595 4.595 14 H 0.101 0.899 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.808 3.192 18 H -0.210 1.210 19 H -0.186 1.186 20 H -0.186 1.186 21 H 0.062 0.938 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.240 0.760 34 H 0.001 0.999 35 H 0.002 0.998 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.544 -9.942 -14.696 18.316 hybrid contribution -0.336 0.703 1.135 1.377 sum -4.880 -9.239 -13.561 17.120 Atomic orbital electron populations 1.21964 0.92350 1.03208 1.02154 1.21136 0.96702 0.93936 0.93396 1.21981 1.00261 0.96562 1.01217 1.22302 1.00187 0.96557 0.95576 1.22324 1.00252 0.98420 0.93979 1.22431 0.95820 0.98970 0.97798 1.22413 1.00696 0.96188 0.93124 0.86757 1.21296 0.84489 0.82053 0.82614 1.90603 1.22829 1.59289 1.75805 1.46281 1.13947 1.46155 1.29418 1.18484 0.95534 0.86626 0.84799 1.21585 0.96907 1.28121 1.12869 0.89931 1.26085 0.99793 0.94799 0.98911 1.70134 1.27199 1.29808 1.29898 0.85201 0.77963 0.78476 0.77543 1.20999 1.18607 1.18586 0.93783 0.91083 0.90100 0.94260 0.90626 0.95463 0.91701 0.88965 0.90507 0.89455 0.92826 0.91027 0.75991 0.99854 0.99827 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.17 71.98 0.59 -2.19 16 2 C -0.05 -1.25 0.87 -51.38 -0.04 -1.29 16 3 C -0.14 -4.42 7.14 71.98 0.51 -3.90 16 4 C -0.11 -2.00 6.12 31.39 0.19 -1.81 16 5 C -0.11 -2.02 6.83 31.67 0.22 -1.80 16 6 C -0.11 -2.97 6.17 31.89 0.20 -2.78 16 7 C -0.10 -2.97 2.70 -10.47 -0.03 -2.99 16 8 H 0.11 2.71 7.85 -2.39 -0.02 2.69 16 9 C 0.51 21.24 5.00 87.66 0.44 21.68 16 10 O -0.60 -31.03 15.01 -3.05 -0.05 -31.08 16 11 N -0.71 -31.40 5.55 -466.78 -2.59 -33.99 16 12 C 0.27 15.26 5.43 85.63 0.46 15.73 16 13 C -0.56 -31.04 9.28 25.60 0.24 -30.80 16 14 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.21 5.46 84.65 0.46 0.67 16 16 N -0.93 -57.29 13.28 21.44 0.28 -57.00 16 17 Si 0.99 42.84 29.54 68.60 2.03 44.86 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.04 1.39 7.44 -2.39 -0.02 1.37 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.03 1.00 7.31 -2.39 -0.02 0.98 16 27 H 0.06 1.22 7.68 -2.39 -0.02 1.21 16 28 H 0.09 1.25 7.68 -2.39 -0.02 1.23 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.75 7.26 -2.39 -0.02 1.73 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.40 15.08 8.32 -92.71 -0.77 14.31 16 34 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 36 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -71.84 290.57 3.19 -68.66 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.27 Total: 18.04 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.24 Total: -9.48 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -2.30 Total: -90.99 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -71.84 3.19 -68.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226406677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.376 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds