Wall clock time and date at job start Sun Mar 29 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.52999 * 110.01729 * 304.16100 * 3 2 1 5 5 N 1.46493 * 109.47326 * 304.96210 * 4 3 2 6 6 C 1.34781 * 120.00159 * 174.89683 * 5 4 3 7 7 O 1.21691 * 119.99689 * 0.02562 * 6 5 4 8 8 C 1.46366 * 119.99969 * 179.72278 * 6 5 4 9 9 H 1.07999 * 120.00252 * 0.27801 * 8 6 5 10 10 C 1.40056 * 120.00091 * 180.27775 * 8 6 5 11 11 N 1.30676 * 119.99676 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 120.00070 * 180.02562 * 10 8 6 13 13 H 1.48491 * 109.47380 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47050 * 119.99905 * 12 10 8 15 15 H 1.48507 * 109.46696 * 239.99469 * 12 10 8 16 16 C 1.54270 * 110.03231 * 65.55555 * 3 2 1 17 17 C 1.54970 * 104.15613 * 95.75277 * 16 3 2 18 18 C 1.54885 * 102.77803 * 37.88770 * 17 16 3 19 19 C 1.53874 * 110.02944 * 182.77533 * 3 2 1 20 20 H 1.08997 * 109.46775 * 55.34104 * 1 2 3 21 21 H 1.08996 * 109.46960 * 175.34072 * 1 2 3 22 22 H 1.08997 * 109.47110 * 295.34032 * 1 2 3 23 23 H 1.08998 * 109.46758 * 239.99775 * 2 1 3 24 24 H 1.09000 * 109.47050 * 119.99779 * 2 1 3 25 25 H 1.09005 * 109.47273 * 184.95581 * 4 3 2 26 26 H 1.09004 * 109.46827 * 64.96388 * 4 3 2 27 27 H 0.97000 * 120.00286 * 354.89567 * 5 4 3 28 28 H 0.96996 * 119.99784 * 180.02562 * 11 10 8 29 29 H 1.08997 * 110.48252 * 214.39493 * 16 3 2 30 30 H 1.08999 * 110.48686 * 337.04523 * 16 3 2 31 31 H 1.08994 * 110.72080 * 279.56884 * 17 16 3 32 32 H 1.09003 * 110.91753 * 156.29452 * 17 16 3 33 33 H 1.09003 * 110.48699 * 203.40321 * 18 17 16 34 34 H 1.09006 * 110.48812 * 80.76295 * 18 17 16 35 35 H 1.09000 * 110.03598 * 359.94746 * 19 3 2 36 36 H 1.08996 * 110.03576 * 121.38243 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4535 2.2053 -1.1895 5 7 1.7581 1.4862 -2.4290 6 6 1.2515 1.9185 -3.6008 7 8 0.5416 2.9065 -3.6292 8 6 1.5608 1.2036 -4.8399 9 1 2.1912 0.3270 -4.8148 10 6 1.0392 1.6561 -6.0584 11 7 0.2760 2.7164 -6.0888 12 14 1.4333 0.7433 -7.6398 13 1 2.3108 -0.4156 -7.3368 14 1 0.1731 0.2617 -8.2605 15 1 2.1295 1.6587 -8.5793 16 6 1.6507 2.1406 1.3194 17 6 2.9056 1.9848 2.2153 18 6 4.0693 2.1659 1.2093 19 6 3.5771 1.4581 -0.0700 20 1 -0.3633 0.5844 -0.8453 21 1 -0.3633 -1.0242 -0.0835 22 1 -0.3633 0.4398 0.9288 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8897 3.2034 -1.2319 26 1 0.3728 2.2859 -1.0723 27 1 2.3243 0.6990 -2.4064 28 1 -0.0856 3.0297 -6.9326 29 1 1.4358 3.1948 1.1442 30 1 0.7926 1.6457 1.7741 31 1 2.9362 0.9934 2.6671 32 1 2.9344 2.7584 2.9827 33 1 4.9753 1.6897 1.5843 34 1 4.2454 3.2241 1.0162 35 1 3.9598 0.4380 -0.1030 36 1 3.9052 2.0091 -0.9513 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229003520.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:32 Heat of formation + Delta-G solvation = -92.280571 kcal Electronic energy + Delta-G solvation = -16103.937343 eV Core-core repulsion = 13585.678029 eV Total energy + Delta-G solvation = -2518.259314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67767 -38.82198 -35.21533 -34.50337 -33.27511 -29.95042 -29.46973 -28.19904 -25.70263 -23.82097 -21.86740 -21.07029 -19.72443 -18.88516 -17.49577 -16.84885 -16.35423 -15.99193 -15.70822 -15.38290 -14.69577 -14.37562 -14.19401 -13.90828 -13.49451 -13.13094 -13.07262 -12.75510 -12.66115 -12.48143 -12.31504 -11.99219 -11.90727 -11.75272 -11.37673 -11.34008 -11.23507 -11.15068 -10.94824 -9.85345 -9.41867 -8.29065 -6.85285 1.39192 1.39598 1.57624 2.24581 2.47946 3.17012 3.61781 3.68079 3.71924 3.81927 4.27935 4.34848 4.40046 4.43260 4.60174 4.70353 4.73373 4.82894 4.85190 4.89083 5.03695 5.11102 5.15553 5.16189 5.27035 5.30852 5.31729 5.43671 5.52914 5.54196 5.58607 5.88949 6.25673 6.32073 6.86851 7.58421 8.51052 8.68721 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042912 B = 0.006422 C = 0.006336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.339360 B = 4358.785297 C = 4418.236020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.101 4.101 3 C -0.064 4.064 4 C 0.149 3.851 5 N -0.746 5.746 6 C 0.537 3.463 7 O -0.637 6.637 8 C -0.573 4.573 9 H 0.086 0.914 10 C 0.027 3.973 11 N -0.824 5.824 12 Si 0.999 3.001 13 H -0.246 1.246 14 H -0.268 1.268 15 H -0.268 1.268 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.118 4.118 20 H 0.026 0.974 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.018 0.982 26 H 0.030 0.970 27 H 0.392 0.608 28 H 0.274 0.726 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.478 -6.840 13.765 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.064 4.064 4 C 0.025 3.975 5 N -0.401 5.401 6 C 0.340 3.660 7 O -0.524 6.524 8 C -0.610 4.610 9 H 0.104 0.896 10 C -0.187 4.187 11 N -0.454 5.454 12 Si 0.818 3.182 13 H -0.169 1.169 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.156 4.156 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.227 0.773 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.866 -5.999 13.682 16.050 hybrid contribution -0.007 -0.104 -1.043 1.048 sum 5.859 -6.103 12.639 15.209 Atomic orbital electron populations 1.21846 0.96553 1.01464 1.01209 1.21525 0.95502 0.94573 1.02233 1.21426 0.95640 0.95806 0.93541 1.21064 0.97819 0.93951 0.84712 1.45760 1.55553 1.32765 1.06004 1.18632 0.79232 0.83934 0.84159 1.90544 1.43627 1.30823 1.87451 1.21459 1.33800 1.14409 0.91341 0.89583 1.27004 0.92313 0.94841 1.04591 1.70210 1.25508 1.21568 1.28122 0.84962 0.79001 0.78755 0.75483 1.16925 1.19298 1.19328 1.22487 0.99318 0.99752 0.93822 1.22458 0.93048 1.02618 0.96904 1.22346 0.98827 1.00046 0.94636 1.22280 0.93455 1.01472 0.98372 0.95505 0.92140 0.91474 0.92749 0.89432 0.96372 0.95209 0.77343 0.91634 0.92777 0.90231 0.90073 0.90564 0.90104 0.92625 0.90325 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 9.35 71.98 0.67 -3.60 16 2 C -0.10 -2.59 4.44 30.60 0.14 -2.45 16 3 C -0.06 -1.80 0.41 -51.46 -0.02 -1.83 16 4 C 0.15 6.11 3.60 86.38 0.31 6.43 16 5 N -0.75 -34.81 4.96 -467.41 -2.32 -37.13 16 6 C 0.54 32.28 7.75 86.36 0.67 32.95 16 7 O -0.64 -44.43 15.02 -4.32 -0.06 -44.49 16 8 C -0.57 -33.41 9.54 24.83 0.24 -33.17 16 9 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 10 C 0.03 1.55 5.50 85.31 0.47 2.02 16 11 N -0.82 -51.88 11.83 21.84 0.26 -51.62 16 12 Si 1.00 41.81 29.56 68.60 2.03 43.84 16 13 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 14 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 15 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 16 C -0.12 -2.74 5.74 31.70 0.18 -2.56 16 17 C -0.11 -2.05 6.91 31.91 0.22 -1.83 16 18 C -0.12 -2.48 6.83 31.67 0.22 -2.26 16 19 C -0.12 -3.02 5.71 31.32 0.18 -2.85 16 20 H 0.03 0.95 6.25 -2.39 -0.01 0.94 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.07 1.60 6.54 -2.39 -0.02 1.59 16 23 H 0.05 1.50 6.86 -2.39 -0.02 1.49 16 24 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.03 1.35 6.59 -2.38 -0.02 1.33 16 27 H 0.39 15.98 6.96 -92.71 -0.65 15.34 16 28 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 29 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 30 H 0.08 1.70 6.17 -2.39 -0.01 1.69 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 1.75 7.67 -2.39 -0.02 1.73 16 36 H 0.04 1.37 7.57 -2.39 -0.02 1.35 16 Total: -1.00 -76.06 284.08 3.59 -72.47 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.42 Total: 26.09 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 3.27 Total: -9.15 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.06 Total: -88.75 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.06 Total: -44.49 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -76.06 3.59 -72.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229003520.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.806 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds