Wall clock time and date at job start Sun Mar 29 2020 22:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46597 * 2 1 4 4 C 1.52997 * 109.47723 * 120.00118 * 2 1 3 5 5 C 1.52992 * 109.47150 * 174.24772 * 4 2 1 6 6 H 1.09005 * 110.88810 * 58.39449 * 5 4 2 7 7 C 1.55161 * 111.03794 * 182.29583 * 5 4 2 8 8 C 1.54326 * 102.94348 * 153.58888 * 7 5 4 9 9 N 1.47023 * 107.27013 * 337.81002 * 8 7 5 10 10 C 1.34781 * 125.64708 * 178.97087 * 9 8 7 11 11 O 1.21681 * 119.99997 * 179.97438 * 10 9 8 12 12 C 1.46372 * 119.99801 * 359.96462 * 10 9 8 13 13 H 1.08001 * 120.00024 * 359.97438 * 12 10 9 14 14 C 1.40050 * 119.99987 * 179.97438 * 12 10 9 15 15 N 1.30665 * 119.99909 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00246 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46899 * 89.99742 * 16 14 12 18 18 H 1.48499 * 109.47477 * 209.99878 * 16 14 12 19 19 H 1.48504 * 109.46990 * 330.00164 * 16 14 12 20 20 C 1.47417 * 108.70582 * 358.94228 * 9 8 7 21 21 H 1.09005 * 109.46692 * 184.94152 * 1 2 3 22 22 H 1.08998 * 109.46827 * 304.93831 * 1 2 3 23 23 H 1.08991 * 109.47556 * 64.94313 * 1 2 3 24 24 H 1.09002 * 109.46932 * 240.00798 * 2 1 3 25 25 H 1.09002 * 109.46857 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47189 * 300.00342 * 3 2 1 27 27 H 1.08992 * 109.46929 * 60.00804 * 3 2 1 28 28 H 1.09006 * 109.46719 * 54.25064 * 4 2 1 29 29 H 1.08998 * 109.46767 * 294.25056 * 4 2 1 30 30 H 1.08996 * 110.72110 * 271.95580 * 7 5 4 31 31 H 1.09000 * 110.71920 * 35.23268 * 7 5 4 32 32 H 1.08991 * 109.88565 * 218.39254 * 8 7 5 33 33 H 1.09004 * 110.00626 * 97.30106 * 8 7 5 34 34 H 0.97004 * 120.00310 * 180.02562 * 15 14 12 35 35 H 1.09008 * 110.36166 * 265.28963 * 20 9 8 36 36 H 1.08995 * 110.37460 * 142.96766 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 3.5632 -0.8476 1.1788 6 1 4.0312 0.1335 1.0965 7 6 4.1147 -1.6258 2.4027 8 6 5.4270 -2.2330 1.8634 9 7 5.3140 -2.2858 0.3985 10 6 6.2627 -2.7350 -0.4469 11 8 6.0591 -2.7329 -1.6465 12 6 7.5381 -3.2252 0.0782 13 1 7.7190 -3.2265 1.1429 14 6 8.5238 -3.6925 -0.8002 15 7 8.3047 -3.6913 -2.0883 16 14 10.1517 -4.3174 -0.1302 17 1 10.0503 -5.7746 0.1368 18 1 11.2247 -4.0701 -1.1266 19 1 10.4741 -3.6042 1.1318 20 6 3.9908 -1.7667 0.0074 21 1 -0.3633 -1.0239 0.0885 22 1 -0.3633 0.5885 0.8424 23 1 -0.3634 0.4352 -0.9308 24 1 1.8933 -0.5137 -0.8901 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.5952 -1.7149 1.3021 29 1 1.7633 -0.1514 2.1361 30 1 4.3157 -0.9478 3.2321 31 1 3.4218 -2.4113 2.7043 32 1 5.5611 -3.2388 2.2613 33 1 6.2724 -1.6063 2.1477 34 1 8.9872 -4.0153 -2.6967 35 1 3.2815 -2.5861 -0.1102 36 1 4.0660 -1.1934 -0.9166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307775335.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:49 Heat of formation + Delta-G solvation = -86.316143 kcal Electronic energy + Delta-G solvation = -15836.038346 eV Core-core repulsion = 13318.037669 eV Total energy + Delta-G solvation = -2518.000677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40313 -38.32977 -36.50287 -34.68273 -32.44725 -30.08593 -28.75188 -27.97559 -26.46635 -23.94269 -21.59521 -21.31931 -20.23253 -18.58860 -17.65736 -17.10608 -16.19077 -15.74155 -15.39159 -15.07839 -14.72795 -14.47203 -14.03562 -13.66536 -13.40243 -13.26648 -12.97880 -12.90141 -12.82158 -12.67957 -12.45700 -12.33724 -12.07133 -11.95870 -11.76708 -11.30920 -11.25420 -11.10325 -10.96535 -9.91771 -9.10370 -8.32961 -6.89342 1.37345 1.39601 1.55230 2.21959 2.41386 2.88884 3.54228 3.61048 3.84272 3.91542 4.14150 4.19489 4.36022 4.42374 4.55157 4.67128 4.75259 4.83905 4.87938 4.96043 5.01297 5.02831 5.05581 5.11792 5.17925 5.27277 5.28201 5.36773 5.44573 5.56117 5.58530 5.64998 6.01801 6.40574 6.82596 7.46114 8.42012 8.63641 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.049752 B = 0.006050 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.657397 B = 4627.356870 C = 4958.261636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.146 4.146 4 C -0.091 4.091 5 C -0.089 4.089 6 H 0.079 0.921 7 C -0.112 4.112 8 C 0.111 3.889 9 N -0.657 5.657 10 C 0.547 3.453 11 O -0.636 6.636 12 C -0.566 4.566 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 1.001 2.999 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.248 1.248 20 C 0.117 3.883 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.275 0.725 35 H 0.040 0.960 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 6.612 11.306 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.203 4.203 4 C -0.129 4.129 5 C -0.108 4.108 6 H 0.097 0.903 7 C -0.150 4.150 8 C -0.013 4.013 9 N -0.394 5.394 10 C 0.354 3.646 11 O -0.524 6.524 12 C -0.602 4.602 13 H 0.105 0.895 14 C -0.188 4.188 15 N -0.453 5.453 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.171 1.171 20 C -0.006 4.006 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -10.618 6.556 10.439 16.270 hybrid contribution 0.840 -0.438 -0.533 1.087 sum -9.779 6.118 9.905 15.204 Atomic orbital electron populations 1.21791 0.93852 1.01994 1.02174 1.21172 0.96715 0.96551 0.97982 1.21856 1.00428 0.95753 1.02247 1.21536 0.91716 1.01081 0.98532 1.22372 0.97350 0.97740 0.93380 0.90294 1.22699 0.94726 1.00020 0.97520 1.21866 0.98995 1.00003 0.80399 1.48584 1.15753 1.67822 1.07288 1.18479 0.84230 0.77334 0.84529 1.90537 1.81880 1.62419 1.17539 1.21409 0.98807 1.44858 0.95150 0.89543 1.27066 1.04211 0.93178 0.94370 1.70201 1.35070 1.35224 1.04805 0.84980 0.74764 0.79209 0.79094 1.18396 1.19535 1.17077 1.22009 0.84920 0.95806 0.97865 0.92662 0.91307 0.92839 0.93655 0.93987 0.92890 0.91029 0.91563 0.89097 0.87641 0.89540 0.93169 0.93126 0.91467 0.94174 0.95169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.19 71.98 0.66 -1.84 16 2 C -0.11 -2.37 2.83 -10.79 -0.03 -2.40 16 3 C -0.15 -3.07 8.98 71.98 0.65 -2.42 16 4 C -0.09 -1.95 4.20 30.59 0.13 -1.82 16 5 C -0.09 -2.54 2.83 -9.40 -0.03 -2.57 16 6 H 0.08 2.29 6.62 -2.38 -0.02 2.28 16 7 C -0.11 -2.89 6.42 31.79 0.20 -2.69 16 8 C 0.11 4.14 6.05 86.73 0.52 4.66 16 9 N -0.66 -32.47 3.33 -816.88 -2.72 -35.19 16 10 C 0.55 34.19 7.78 86.36 0.67 34.86 16 11 O -0.64 -45.58 15.28 -4.29 -0.07 -45.64 16 12 C -0.57 -33.68 9.06 24.83 0.23 -33.46 16 13 H 0.09 4.64 7.16 -2.91 -0.02 4.62 16 14 C 0.03 1.53 5.50 85.31 0.47 2.00 16 15 N -0.82 -52.22 11.83 21.84 0.26 -51.96 16 16 Si 1.00 41.98 29.56 68.60 2.03 44.01 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 20 C 0.12 4.87 5.49 86.86 0.48 5.35 16 21 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.04 1.27 7.16 -2.39 -0.02 1.25 16 25 H 0.04 1.02 6.58 -2.39 -0.02 1.00 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.41 8.12 -2.38 -0.02 1.39 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.28 15.71 8.29 -92.71 -0.77 14.94 16 35 H 0.04 1.65 8.02 -2.38 -0.02 1.63 16 36 H 0.03 1.41 7.82 -2.39 -0.02 1.39 16 Total: -1.00 -79.51 290.73 4.49 -75.02 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.03 Total: 14.08 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 3.95 Total: -0.32 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.46 Total: -87.15 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -0.07 Total: -45.64 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -79.51 4.49 -75.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307775335.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.292 kcal (2) G-P(sol) polarization free energy of solvation -79.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds