Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47433 * 2 1 4 4 C 1.52992 * 109.47374 * 182.74014 * 3 2 1 5 5 C 1.50698 * 115.55096 * 279.63039 * 4 3 2 6 6 O 1.21285 * 120.00071 * 139.64273 * 5 4 3 7 7 N 1.34774 * 119.99914 * 319.64584 * 5 4 3 8 8 C 1.46507 * 119.99999 * 174.77755 * 7 5 4 9 9 H 1.09005 * 109.46899 * 324.99730 * 8 7 5 10 10 C 1.53004 * 109.47086 * 84.99855 * 8 7 5 11 11 C 1.50697 * 109.47000 * 204.99966 * 8 7 5 12 12 H 1.07999 * 120.00426 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99755 * 180.02562 * 11 8 7 14 14 N 1.31507 * 120.00244 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99813 * 180.02562 * 13 11 8 16 16 H 1.48507 * 109.47124 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47598 * 119.99781 * 15 13 11 18 18 H 1.48502 * 109.46749 * 239.99916 * 15 13 11 19 19 C 1.52997 * 117.49998 * 65.30121 * 4 3 2 20 20 C 1.53002 * 60.03201 * 107.47922 * 19 4 3 21 21 H 1.09002 * 109.47533 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47619 * 300.00357 * 1 2 3 23 23 H 1.09007 * 109.46961 * 60.00080 * 1 2 3 24 24 H 1.09000 * 109.47619 * 239.99643 * 2 1 3 25 25 H 1.09007 * 109.46961 * 119.99920 * 2 1 3 26 26 H 1.09003 * 109.46772 * 62.73908 * 3 2 1 27 27 H 1.09002 * 109.47071 * 302.74369 * 3 2 1 28 28 H 0.97001 * 120.00541 * 354.77770 * 7 5 4 29 29 H 1.08997 * 109.46831 * 60.00480 * 10 8 7 30 30 H 1.09003 * 109.46518 * 179.97438 * 10 8 7 31 31 H 1.08994 * 109.46887 * 299.99924 * 10 8 7 32 32 H 0.97001 * 120.00471 * 180.02562 * 14 13 11 33 33 H 1.09006 * 117.50262 * 214.97811 * 19 4 3 34 34 H 1.09000 * 117.50179 * 359.97438 * 19 4 3 35 35 H 1.09001 * 117.49833 * 107.50601 * 20 19 4 36 36 H 1.09002 * 117.49536 * 252.51949 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5684 1.4430 -0.0690 5 6 4.2781 1.1945 1.2370 6 8 5.2643 0.4892 1.2667 7 7 3.8167 1.7558 2.3721 8 6 4.4360 1.4240 3.6577 9 1 4.7492 0.3799 3.6514 10 6 5.6551 2.3208 3.8831 11 6 3.4395 1.6429 4.7667 12 1 2.4444 1.9944 4.5371 13 6 3.7983 1.3953 6.0748 14 7 5.0101 0.9678 6.3546 15 14 2.5628 1.6659 7.4494 16 1 1.2801 2.1456 6.8748 17 1 2.3356 0.3874 8.1697 18 1 3.0905 2.6807 8.3966 19 6 4.2184 0.8959 -1.3414 20 6 4.2306 2.4003 -1.0630 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 1.7173 1.9419 0.9136 27 1 1.6371 1.9703 -0.8644 28 1 3.0746 2.3796 2.3380 29 1 5.3419 3.3648 3.8895 30 1 6.1155 2.0742 4.8398 31 1 6.3758 2.1625 3.0810 32 1 5.2625 0.7933 7.2748 33 1 5.1595 0.3565 -1.2340 34 1 3.5571 0.5352 -2.1293 35 1 5.1798 2.8507 -0.7725 36 1 3.5771 3.0293 -1.6675 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308541408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = -57.210142 kcal Electronic energy + Delta-G solvation = -15934.991319 eV Core-core repulsion = 13418.252773 eV Total energy + Delta-G solvation = -2516.738546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10098 -38.14400 -36.66652 -34.62886 -34.22284 -31.02950 -28.22403 -27.37439 -24.91834 -23.54047 -22.47907 -21.99861 -20.46689 -18.59342 -17.61614 -17.22891 -16.40336 -15.99294 -15.62448 -15.21494 -15.08079 -14.45672 -14.24234 -13.81570 -13.68220 -13.10914 -12.95197 -12.89550 -12.73749 -12.59462 -12.39560 -12.31117 -12.16375 -12.10543 -11.55255 -11.30702 -11.12664 -10.84237 -10.68029 -10.53189 -9.76049 -8.19715 -6.37675 1.42950 1.43451 1.56049 1.69642 2.33698 2.59526 2.89130 3.10592 3.66758 3.88296 3.91942 4.06220 4.28142 4.38661 4.53334 4.69894 4.73890 4.87981 4.88229 4.90115 4.99750 5.02973 5.05965 5.07261 5.26816 5.31133 5.37760 5.41551 5.49485 5.59635 5.65720 5.88708 6.07244 6.70392 6.96608 7.30114 7.54898 8.87107 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027756 B = 0.007771 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.560177 B = 3602.248619 C = 4304.047956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C -0.070 4.070 4 C -0.174 4.174 5 C 0.530 3.470 6 O -0.607 6.607 7 N -0.700 5.700 8 C 0.271 3.729 9 H -0.007 1.007 10 C -0.133 4.133 11 C -0.545 4.545 12 H 0.073 0.927 13 C 0.013 3.987 14 N -0.919 5.919 15 Si 0.974 3.026 16 H -0.258 1.258 17 H -0.283 1.283 18 H -0.277 1.277 19 C -0.143 4.143 20 C -0.134 4.134 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.105 0.895 28 H 0.403 0.597 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.078 0.922 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 3.715 -13.739 16.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.108 4.108 4 C -0.177 4.177 5 C 0.317 3.683 6 O -0.490 6.490 7 N -0.348 5.348 8 C 0.168 3.832 9 H 0.011 0.989 10 C -0.192 4.192 11 C -0.583 4.583 12 H 0.092 0.908 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.798 3.202 16 H -0.182 1.182 17 H -0.209 1.209 18 H -0.203 1.203 19 C -0.180 4.180 20 C -0.171 4.171 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.238 0.762 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.273 3.164 -13.524 16.166 hybrid contribution -0.118 -0.037 1.274 1.280 sum -8.391 3.126 -12.250 15.173 Atomic orbital electron populations 1.21730 0.94156 1.02007 1.02434 1.21496 0.96957 0.96580 1.01128 1.21160 0.88245 0.97551 1.03826 1.21596 0.96738 1.10942 0.88443 1.20351 0.83385 0.78632 0.85888 1.90602 1.29072 1.41838 1.87450 1.46213 1.36207 1.45645 1.06728 1.18340 0.91666 0.93160 0.80047 0.98889 1.21891 0.98116 0.98794 1.00382 1.21556 0.98785 1.46437 0.91536 0.90848 1.25839 0.97324 0.94179 1.01343 1.70063 1.20112 1.45373 1.20179 0.85269 0.78981 0.77688 0.78240 1.18220 1.20897 1.20296 1.23002 1.02171 0.96769 0.96035 1.23191 1.01920 0.93019 0.98995 0.92652 0.93138 0.90723 0.91083 0.95499 0.91661 0.87714 0.76167 0.94067 0.91444 0.97161 0.92504 0.90366 0.85071 0.90011 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.91 71.98 0.71 -2.10 16 2 C -0.12 -3.01 5.85 30.59 0.18 -2.83 16 3 C -0.07 -1.62 5.09 30.59 0.16 -1.46 16 4 C -0.17 -5.08 1.97 -52.91 -0.10 -5.18 16 5 C 0.53 22.57 7.28 87.66 0.64 23.21 16 6 O -0.61 -31.76 15.94 -3.05 -0.05 -31.81 16 7 N -0.70 -30.76 4.92 -446.07 -2.19 -32.95 16 8 C 0.27 14.68 2.52 44.24 0.11 14.79 16 9 H -0.01 -0.43 7.66 -2.38 -0.02 -0.45 16 10 C -0.13 -7.05 9.26 71.98 0.67 -6.38 16 11 C -0.55 -29.54 8.73 25.60 0.22 -29.31 16 12 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 13 C 0.01 0.71 5.30 84.66 0.45 1.16 16 14 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 15 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.14 -3.58 9.29 30.59 0.28 -3.30 16 20 C -0.13 -3.06 9.89 30.62 0.30 -2.76 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 24 H 0.07 1.56 7.57 -2.39 -0.02 1.54 16 25 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 1.59 6.80 -2.39 -0.02 1.57 16 27 H 0.10 1.66 7.95 -2.39 -0.02 1.64 16 28 H 0.40 15.14 7.29 -92.71 -0.68 14.47 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.08 2.40 7.68 -2.38 -0.02 2.39 16 34 H 0.13 2.38 7.93 -2.39 -0.02 2.36 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 36 H 0.14 2.09 8.08 -2.39 -0.02 2.07 16 Total: -1.00 -69.08 298.12 4.02 -65.05 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.37 Total: 22.90 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.62 Total: -14.17 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.95 Total: -86.46 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.05 Total: -31.81 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -69.08 4.02 -65.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308541408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.845 kcal (2) G-P(sol) polarization free energy of solvation -69.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds